Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1147

Experiment: Carbon source D-Glucose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1146 and Dshi_1147 overlap by 4 nucleotidesDshi_1147 and Dshi_1148 overlap by 1 nucleotidesDshi_1148 and Dshi_1149 are separated by 145 nucleotides Dshi_1146: Dshi_1146 - threonine synthase (RefSeq), at 1,172,413 to 1,173,804 _1146 Dshi_1147: Dshi_1147 - processing peptidase (RefSeq), at 1,173,801 to 1,175,081 _1147 Dshi_1148: Dshi_1148 - GCN5-related N-acetyltransferase (RefSeq), at 1,175,081 to 1,175,665 _1148 Dshi_1149: Dshi_1149 - translation initiation factor IF-3 (RefSeq), at 1,175,811 to 1,176,419 _1149 Position (kb) 1173 1174 1175 1176Strain fitness (log2 ratio) -3 -2 -1 0 1at 1174.051 kb on + strand, within Dshi_1147at 1174.241 kb on - strand, within Dshi_1147at 1174.460 kb on + strand, within Dshi_1147at 1174.579 kb on - strand, within Dshi_1147at 1174.586 kb on + strand, within Dshi_1147at 1174.586 kb on + strand, within Dshi_1147at 1174.586 kb on + strand, within Dshi_1147at 1174.586 kb on + strand, within Dshi_1147at 1174.594 kb on - strand, within Dshi_1147at 1174.751 kb on + strand, within Dshi_1147at 1174.889 kb on - strand, within Dshi_1147

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Glucose 10 mM
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1,174,051 + Dshi_1147 0.20 -0.9
1,174,241 - Dshi_1147 0.34 -1.0
1,174,460 + Dshi_1147 0.51 -3.2
1,174,579 - Dshi_1147 0.61 +0.4
1,174,586 + Dshi_1147 0.61 +0.6
1,174,586 + Dshi_1147 0.61 -1.5
1,174,586 + Dshi_1147 0.61 -0.8
1,174,586 + Dshi_1147 0.61 -1.5
1,174,594 - Dshi_1147 0.62 -1.3
1,174,751 + Dshi_1147 0.74 -1.2
1,174,889 - Dshi_1147 0.85 -1.8

Or see this region's nucleotide sequence