Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2807

Experiment: BHIS with Trimethoprim 0.00625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Trimethoprim 0.00625 mM
3,485,134	+		BT2806	0.52	-0.5
3,485,176	+		BT2806	0.54	+2.5
3,485,180	+		BT2806	0.54	+0.7
3,485,181	-		BT2806	0.54	-0.9
3,485,181	-		BT2806	0.54	-2.3
3,485,217	-		BT2806	0.56	+1.5
3,485,217	-		BT2806	0.56	-0.8
3,485,227	+		BT2806	0.57	-2.4
3,485,230	+		BT2806	0.57	-1.1
3,485,234	-		BT2806	0.57	-3.8
3,485,354	-		BT2806	0.63	+1.3
3,485,356	-		BT2806	0.63	-0.7
3,485,387	-		BT2806	0.65	-1.1
3,485,413	-		BT2806	0.66	-4.2
3,485,429	+		BT2806	0.67	-0.5
3,485,437	+		BT2806	0.67	+2.7
3,485,438	-		BT2806	0.67	-2.2
3,485,495	+		BT2806	0.70	-1.1
3,485,495	+		BT2806	0.70	-2.5
3,485,499	+		BT2806	0.70	-1.9
3,485,500	-		BT2806	0.70	-0.6
3,485,511	-		BT2806	0.71	+2.9
3,485,591	+		BT2806	0.75	-1.7
3,485,592	-		BT2806	0.75	-1.5
3,485,592	-		BT2806	0.75	+2.9
3,485,611	+		BT2806	0.76	-0.4
3,485,618	-		BT2806	0.76	-1.2
3,485,684	+		BT2806	0.79	-0.5
3,485,686	+		BT2806	0.80	+0.1
3,485,686	+		BT2806	0.80	-2.4
3,485,745	+		BT2806	0.83	+4.2
3,485,746	-		BT2806	0.83	+0.7
3,485,746	-		BT2806	0.83	-1.1
3,485,749	+		BT2806	0.83	-1.9
3,485,749	+		BT2806	0.83	-0.3
3,485,749	+		BT2806	0.83	-2.8
3,485,750	-		BT2806	0.83	+0.5
3,485,750	-		BT2806	0.83	+1.8
3,485,786	+		BT2806	0.85	-1.2
3,485,797	-		BT2806	0.85	+1.3
3,485,837	+		BT2806	0.87	-2.9
3,485,839	+		BT2806	0.87	-1.3
3,485,848	+		BT2806	0.88	-0.2
3,485,893	+		BT2806	0.90	-0.9
3,485,907	-				+0.7
3,485,907	-				+1.8
3,485,936	-				+1.9
3,485,946	-				+0.1
3,485,946	-				+0.1
3,485,955	-				-1.9
3,485,957	-				-1.9
3,486,011	-				+1.6
3,486,047	+				+3.7
3,486,105	+				+1.7
3,486,114	-				-1.2
3,486,127	+				-2.2
3,486,134	-				+2.1
3,486,147	+				-1.5
3,486,151	-				+3.2
3,486,205	+				-1.9
3,486,216	-				+0.4
3,486,247	-				-3.3
3,486,247	-				+2.4
3,486,250	+				+0.7
3,486,278	+				-2.2
3,486,325	-		BT2807	0.12	+2.2
3,486,364	+		BT2807	0.15	-3.3
3,486,365	-		BT2807	0.15	-2.1
3,486,365	-		BT2807	0.15	-0.2
3,486,365	-		BT2807	0.15	+2.1
3,486,408	+		BT2807	0.17	+1.8
3,486,409	+		BT2807	0.17	+1.2
3,486,440	-		BT2807	0.19	-1.1
3,486,464	+		BT2807	0.21	+0.1
3,486,465	-		BT2807	0.21	-0.4
3,486,475	+		BT2807	0.21	-3.4
3,486,480	+		BT2807	0.22	-2.2
3,486,511	+		BT2807	0.24	-0.5
3,486,548	-		BT2807	0.26	-3.4
3,486,585	-		BT2807	0.28	-1.4
3,486,601	+		BT2807	0.29	-0.3
3,486,601	+		BT2807	0.29	+2.9
3,486,602	-		BT2807	0.29	-1.7
3,486,644	+		BT2807	0.32	-2.7
3,486,647	+		BT2807	0.32	-0.9
3,486,654	-		BT2807	0.32	+0.7
3,486,659	+		BT2807	0.33	+1.2
3,486,725	-		BT2807	0.37	-1.1
3,486,725	-				+1.1
3,486,725	-		BT2807	0.37	+1.1
3,486,774	+		BT2807	0.40	-2.8
3,486,775	-		BT2807	0.40	-2.7
3,486,775	-		BT2807	0.40	+2.6
3,486,837	+		BT2807	0.44	-1.5
3,486,837	+		BT2807	0.44	-1.8
3,486,862	-		BT2807	0.45	+0.6
3,486,904	+		BT2807	0.48	-1.3
3,486,905	-		BT2807	0.48	+1.8
3,486,942	+		BT2807	0.50	+0.1
3,486,945	+		BT2807	0.50	-0.0
3,486,979	+		BT2807	0.53	-2.7
3,486,979	+		BT2807	0.53	+1.0
3,486,980	-		BT2807	0.53	+1.2
3,487,000	+		BT2807	0.54	-2.5
3,487,001	-		BT2807	0.54	-3.6
3,487,020	+		BT2807	0.55	+0.1
3,487,021	-		BT2807	0.55	-0.1
3,487,064	-		BT2807	0.58	-0.8
3,487,064	-		BT2807	0.58	-3.5
3,487,103	+		BT2807	0.60	-1.5
3,487,104	-		BT2807	0.60	+1.7
3,487,125	-		BT2807	0.62	-0.6
3,487,151	-		BT2807	0.63	-3.6
3,487,155	-		BT2807	0.63	-2.0
3,487,174	+		BT2807	0.65	-1.6
3,487,175	-		BT2807	0.65	-1.1
3,487,206	-		BT2807	0.67	-1.9
3,487,210	+		BT2807	0.67	+3.6
3,487,231	+		BT2807	0.68	-2.0
3,487,321	+		BT2807	0.74	+0.4
3,487,328	-		BT2807	0.74	+1.2
3,487,336	-		BT2807	0.75	-1.7
3,487,356	-		BT2807	0.76	-2.3
3,487,358	-		BT2807	0.76	-2.0
3,487,359	+		BT2807	0.76	+2.9
3,487,359	+		BT2807	0.76	-0.5
3,487,359	+		BT2807	0.76	-1.0
3,487,374	+		BT2807	0.77	+0.7
3,487,375	-		BT2807	0.77	+1.7
3,487,399	+		BT2807	0.78	+0.1
3,487,443	+		BT2807	0.81	-1.9
3,487,448	-		BT2807	0.81	+0.1
3,487,448	-		BT2807	0.81	-0.2
3,487,451	-		BT2807	0.82	-2.9
3,487,480	+		BT2807	0.83	+1.8
3,487,481	-		BT2807	0.84	-0.6
3,487,492	-		BT2807	0.84	+1.7
3,487,492	-		BT2807	0.84	+0.9
3,487,500	+				+0.1
3,487,508	-		BT2807	0.85	-1.6
3,487,529	+		BT2807	0.86	+2.9
3,487,531	+		BT2807	0.87	-0.9
3,487,557	+		BT2807	0.88	+0.8
3,487,596	-				+1.5
3,487,596	-				-1.4
3,487,596	-				-1.1
3,487,596	-				-1.5
3,487,615	+				-0.7
3,487,679	-				+2.1
3,487,683	+				+2.1
3,487,729	+				-0.9
3,487,758	+				+0.1
3,487,768	+				+2.7
3,487,769	-				-2.3
3,487,770	+				-2.7
3,487,772	+				+0.1
3,487,772	+				+0.8
3,487,772	+				-1.4
3,487,773	-				-2.9
3,487,773	-				-1.3
3,487,799	+				-2.5
3,487,889	+		BT2808	0.13	+1.1
3,487,889	+		BT2808	0.13	-0.8
3,487,890	-		BT2808	0.13	+2.7
3,487,908	+		BT2808	0.15	-1.0
3,487,945	-		BT2808	0.18	+3.3
3,487,945	-		BT2808	0.18	-0.6
3,487,945	-		BT2808	0.18	-0.1
3,487,950	+		BT2808	0.19	-2.2
3,487,951	-		BT2808	0.19	+0.9
3,487,952	+		BT2808	0.19	-2.0
3,487,952	+		BT2808	0.19	-2.3
3,487,981	+		BT2808	0.22	-1.9
3,487,994	-		BT2808	0.23	-0.3
3,488,022	-		BT2808	0.26	-2.6
3,488,028	-		BT2808	0.26	+0.5
3,488,038	+		BT2808	0.27	-1.3
3,488,039	-		BT2808	0.28	+0.6
3,488,089	-		BT2808	0.32	-0.9
3,488,115	-		BT2808	0.35	-3.7
3,488,142	+		BT2808	0.38	-0.3
3,488,143	-		BT2808	0.38	-2.7
3,488,156	-		BT2808	0.39	-1.5
3,488,169	-		BT2808	0.40	-3.4
3,488,205	-		BT2808	0.44	-1.7
3,488,208	+		BT2808	0.44	+2.2
3,488,208	+		BT2808	0.44	+1.4
3,488,208	+		BT2808	0.44	+0.1
3,488,209	-		BT2808	0.44	-0.8
3,488,209	-		BT2808	0.44	-3.3
3,488,209	-		BT2808	0.44	+0.7
3,488,211	-		BT2808	0.44	-1.0
3,488,267	-		BT2808	0.50	+1.6
3,488,267	-		BT2808	0.50	-3.5
3,488,313	-		BT2808	0.54	-3.0
3,488,313	-		BT2808	0.54	-3.1
3,488,313	-		BT2808	0.54	-2.9
3,488,316	-		BT2808	0.55	-2.4
3,488,335	+		BT2808	0.57	-1.2
3,488,424	+		BT2808	0.65	-1.5
3,488,444	+		BT2808	0.67	-0.9
3,488,444	+		BT2808	0.67	-1.2
3,488,476	-		BT2808	0.71	-3.1
3,488,502	+		BT2808	0.73	-0.9
3,488,502	+		BT2808	0.73	+1.7
3,488,524	+		BT2808	0.75	+0.1
3,488,525	-		BT2808	0.75	+1.1
3,488,527	-		BT2808	0.76	+1.1
3,488,527	-		BT2808	0.76	-0.8
3,488,532	-		BT2808	0.76	-1.4
3,488,549	-		BT2808	0.78	-2.7
3,488,549	-		BT2808	0.78	-2.2
3,488,549	-		BT2808	0.78	+1.8
3,488,643	-		BT2808	0.87	+1.1
3,488,696	-				+1.3