Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_24

Experiment: BHIS with Trimethoprim 0.00625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Trimethoprim 0.00625 mM
19,654	+		p5482_22	0.34	-0.6
19,685	+		p5482_22	0.41	+1.9
19,685	+		p5482_22	0.41	-1.5
19,685	+		p5482_22	0.41	+0.5
19,686	-		p5482_22	0.41	-1.0
19,686	-		p5482_22	0.41	-2.0
19,729	+		p5482_22	0.51	+0.5
19,730	-		p5482_22	0.51	-0.6
19,730	-		p5482_22	0.51	+1.6
19,793	+		p5482_22	0.66	+0.3
19,853	+		p5482_22	0.79	-0.5
19,854	-		p5482_22	0.79	-0.6
19,854	-		p5482_22	0.79	-0.4
19,854	-		p5482_22	0.79	+1.4
19,858	+		p5482_22	0.80	-1.3
19,859	-		p5482_22	0.80	-0.1
19,859	-		p5482_22	0.80	-1.0
19,866	+		p5482_22	0.82	+0.8
19,866	+		p5482_22	0.82	+1.1
19,866	+		p5482_22	0.82	-1.9
19,866	+		p5482_22	0.82	-0.9
19,867	-		p5482_22	0.82	-0.0
19,867	-		p5482_22	0.82	+2.1
19,867	-		p5482_22	0.82	+1.2
19,867	-		p5482_22	0.82	-1.4
19,894	-		p5482_22	0.88	+1.3
19,911	-				+0.9
19,933	+				+0.1
19,945	+				+0.8
19,946	-				+0.6
19,951	+				-2.3
19,952	-				-1.3
19,972	+				-1.2
20,003	+				-1.3
20,006	+				-1.0
20,006	+				-1.9
20,006	+				-0.8
20,006	+				+1.9
20,006	+				-2.0
20,007	-				+0.7
20,007	-				+0.6
20,007	-				-0.7
20,010	+				-0.4
20,010	+				+0.3
20,013	-				-0.9
20,019	+				-0.9
20,019	+				+0.4
20,020	-				-0.4
20,020	-				+1.3
20,020	-				-1.5
20,020	-				-1.4
20,026	+				+0.2
20,027	-				-3.7
20,027	-				-1.5
20,035	-				-3.7
20,040	+				+1.1
20,040	+				-0.1
20,040	+				-1.4
20,040	+				-0.4
20,043	+				-3.8
20,043	+				-0.8
20,043	+				-0.8
20,044	-				+0.4
20,044	-				-1.7
20,050	+				-0.6
20,103	-				-1.2
20,141	+				-0.9
20,141	+				-1.6
20,141	+				+1.9
20,141	+				-1.0
20,141	+				+1.4
20,141	+				-2.1
20,142	-				-0.7
20,142	-				-0.9
20,142	-				+1.6
20,143	+				-0.9
20,144	+				-1.7
20,144	+				-0.4
20,144	+				-0.8
20,159	-				+1.3
20,159	-				-1.0
20,220	+				-1.7
20,220	+				+0.8
20,221	-				-1.5
20,222	+				-0.9
20,222	+				+1.1
20,222	+				-3.2
20,222	+				-0.7
20,222	+				-0.8
20,223	-				-1.5
20,223	-				-1.6
20,223	-				-0.7
20,223	-				-1.6
20,223	-				-0.9
20,223	-				-1.7
20,223	-				-1.2
20,223	-				-0.6
20,223	-				-1.8
20,223	-				-0.7
20,223	-				+2.6
20,224	+				+0.8
20,224	+				-1.9
20,224	+				-0.8
20,224	+				-1.3
20,224	+				+1.6
20,224	+				-0.9
20,224	+				-0.8
20,225	-				-0.4
20,225	-				-1.0
20,225	-				-1.1
20,270	-				+3.2
20,292	+				-0.9
20,292	+				+0.3
20,293	-				-0.8
20,293	-				+4.7
20,305	+				-1.0
20,306	-				-1.3
20,306	-				-0.6
20,306	-				-1.2
20,310	+		p5482_23	0.11	-1.6
20,313	-		p5482_23	0.12	+0.4
20,313	-		p5482_23	0.12	-1.4
20,326	+		p5482_23	0.17	-3.6
20,327	-		p5482_23	0.18	-1.3
20,327	-		p5482_23	0.18	-0.9
20,327	-		p5482_23	0.18	+0.8
20,332	+		p5482_23	0.20	-2.0
20,388	-		p5482_23	0.43	+1.2
20,388	-		p5482_23	0.43	-1.0
20,441	+		p5482_23	0.66	+0.2
20,459	+		p5482_23	0.73	-2.3
20,460	-		p5482_23	0.74	-1.0
20,460	-		p5482_23	0.74	-1.4
20,471	+		p5482_23	0.78	+1.1
20,471	+		p5482_23	0.78	-0.4
20,472	-		p5482_23	0.79	+0.8
20,474	+		p5482_23	0.80	-0.4
20,475	-		p5482_23	0.80	-1.6
20,516	-				-2.7
20,521	+				-1.5
20,521	+				-2.3
20,521	+				-2.0
20,522	-				-1.1
20,522	-				-1.3
20,522	-				+1.7
20,529	+				-2.7
20,530	-				-0.4
20,537	-				-1.6
20,538	+				+0.1
20,580	+				+2.8
20,580	+				-2.5
20,580	+				+0.3
20,588	+				-2.2
20,588	+				+0.1
20,588	+				+0.6
20,589	-				+1.0
20,589	-				+0.1
20,589	-				-1.3
20,594	+				-3.0
20,627	-				-0.3
20,637	+				-0.9
20,644	+				-2.1
20,644	+				-0.8
20,644	+				+1.1
20,644	+				-1.1
20,645	-				-2.1
20,645	-				-0.4
20,645	-				-0.6
20,645	-				-2.4
20,660	+				-0.8
20,661	-				-2.1
20,661	-				-0.7
20,661	-				-0.8
20,662	+				-2.7
20,662	+				-0.9
20,663	-				-0.7
20,663	-				-1.5
20,663	-				-1.7
20,663	-				+0.9
20,689	+		p5482_24	0.21	-0.5
20,689	+		p5482_24	0.21	+0.1
20,689	+		p5482_24	0.21	+0.5
20,689	+		p5482_24	0.21	-0.6
20,689	+		p5482_24	0.21	-1.1
20,689	+		p5482_24	0.21	+1.8
20,690	-		p5482_24	0.22	+0.6
20,690	-		p5482_24	0.22	+0.2
20,690	-		p5482_24	0.22	+0.6
20,691	+		p5482_24	0.22	-1.4
20,691	+		p5482_24	0.22	-0.4
20,691	+		p5482_24	0.22	+1.3
20,691	+		p5482_24	0.22	-0.4
20,692	-		p5482_24	0.23	-0.2
20,696	+		p5482_24	0.25	-0.9
20,696	+		p5482_24	0.25	-0.5
20,751	+				+0.2
20,778	+		p5482_24	0.66	+2.2
20,778	+		p5482_24	0.66	-0.5
20,780	+		p5482_24	0.67	-1.0
20,780	+		p5482_24	0.67	-0.5
20,780	+		p5482_24	0.67	-3.6
20,780	+		p5482_24	0.67	-1.0
20,780	+		p5482_24	0.67	-3.8
20,780	+		p5482_24	0.67	-3.0
20,781	-		p5482_24	0.67	+0.6
20,781	-		p5482_24	0.67	+0.7
20,781	-		p5482_24	0.67	+0.7
20,781	-		p5482_24	0.67	+2.4
20,781	-		p5482_24	0.67	-1.3
20,781	-		p5482_24	0.67	-2.2
20,822	+		p5482_24	0.88	+1.0
20,822	+		p5482_24	0.88	+0.2
20,822	+		p5482_24	0.88	-0.2
20,823	-		p5482_24	0.88	+0.7
20,829	+				+1.6
20,829	+				-0.7
20,829	+				+0.7
20,830	-				-3.4
20,830	-				-0.9
20,830	-				+0.3
20,830	-				-0.7
20,831	+				+2.3
20,831	+				-3.4
20,831	+				+0.7
20,832	-				-2.6
20,850	-				-0.5
20,863	+				-0.7
20,877	+				-0.5
20,882	-				+0.2
20,882	-				-2.8
20,885	+				+1.2
20,885	+				-1.4
20,885	+				-0.2
20,886	-				-1.7
20,886	-				+0.4
20,912	+				-0.3
20,912	+				+1.6
20,913	-				-1.8
20,959	+				+0.1
20,960	-				-0.4
20,999	-				-0.5
20,999	-				-0.1
21,011	+				-1.3
21,011	+				+0.7
21,011	+				+0.6
21,011	+				-0.6
21,012	-				+1.6
21,013	+				+0.1
21,014	-				+1.0
21,022	-				-0.4
21,022	-				-0.6
21,027	-				+0.1
21,027	-				-0.4
21,032	+				-1.8
21,032	+				-1.4
21,037	+				+0.6
21,038	-				-1.0
21,077	-		p5482_25	0.17	+0.1
21,090	+		p5482_25	0.21	-3.4
21,090	+		p5482_25	0.21	-0.6
21,090	+		p5482_25	0.21	+0.0
21,090	+		p5482_25	0.21	-1.1
21,090	+		p5482_25	0.21	-0.4
21,090	+		p5482_25	0.21	-0.5
21,090	+		p5482_25	0.21	-2.0
21,090	+		p5482_25	0.21	-1.3
21,090	+		p5482_25	0.21	-0.9
21,090	+		p5482_25	0.21	-0.6
21,091	-		p5482_25	0.22	-2.1
21,091	-		p5482_25	0.22	-0.9
21,091	-		p5482_25	0.22	-2.4
21,101	+		p5482_25	0.25	-0.7
21,101	+		p5482_25	0.25	+1.2
21,101	+		p5482_25	0.25	-1.1
21,101	+		p5482_25	0.25	+1.2
21,101	+		p5482_25	0.25	-1.5
21,102	-		p5482_25	0.25	-0.2
21,102	-		p5482_25	0.25	-0.6
21,118	+		p5482_25	0.30	-0.8
21,118	+		p5482_25	0.30	-1.0
21,119	-		p5482_25	0.30	+1.3
21,120	+		p5482_25	0.31	-1.9
21,120	+		p5482_25	0.31	+1.2
21,120	+		p5482_25	0.31	-1.1
21,120	+		p5482_25	0.31	-1.7
21,121	-		p5482_25	0.31	+0.5
21,121	-		p5482_25	0.31	-1.8
21,121	-		p5482_25	0.31	-0.4
21,123	+		p5482_25	0.31	+0.8
21,123	+		p5482_25	0.31	-0.8
21,123	+		p5482_25	0.31	+1.3
21,123	+		p5482_25	0.31	+0.7
21,124	-		p5482_25	0.32	-0.5
21,136	+		p5482_25	0.35	+1.9
21,148	+		p5482_25	0.39	+2.3
21,148	+		p5482_25	0.39	-1.1
21,148	+		p5482_25	0.39	-1.0
21,149	-		p5482_25	0.39	-1.3
21,188	+		p5482_25	0.51	-0.6
21,188	+		p5482_25	0.51	+0.8
21,188	+		p5482_25	0.51	+0.3
21,216	+		p5482_25	0.60	-1.6
21,216	+		p5482_25	0.60	-0.3
21,216	+		p5482_25	0.60	-3.6
21,216	+		p5482_25	0.60	+1.3
21,216	+		p5482_25	0.60	-1.3
21,216	+		p5482_25	0.60	-2.6
21,217	-		p5482_25	0.60	-1.3
21,217	-		p5482_25	0.60	-3.4
21,218	+		p5482_25	0.61	-0.7
21,219	-		p5482_25	0.61	+0.4
21,268	+		p5482_25	0.76	+1.2
21,268	+		p5482_25	0.76	-0.5
21,269	-		p5482_25	0.76	-2.8
21,269	-		p5482_25	0.76	-0.8
21,269	-		p5482_25	0.76	-2.0
21,269	-		p5482_25	0.76	-1.1
21,269	-		p5482_25	0.76	-1.1
21,272	+		p5482_25	0.77	+0.7
21,273	-		p5482_25	0.77	-1.3
21,295	+		p5482_25	0.84	-1.2
21,295	+		p5482_25	0.84	-3.2
21,295	+		p5482_25	0.84	+0.3
21,296	-		p5482_25	0.84	-2.2
21,296	-		p5482_25	0.84	-0.5
21,296	-		p5482_25	0.84	-0.3
21,317	+				-1.8
21,318	-				-1.1
21,350	+				-0.1
21,350	+				-1.0
21,350	+				-1.6
21,351	-				-0.9
21,351	-				-1.1
21,351	-				-2.3
21,351	-				+0.8
21,351	-				-0.8
21,372	+				-1.7
21,372	+				+0.2
21,386	-				-0.4
21,386	-				-2.4
21,443	+				+1.1
21,443	+				-0.6
21,443	+				-0.5
21,444	-				-0.4
21,444	-				-0.3
21,444	-				+1.1
21,445	+				-0.6
21,463	-				-0.4
21,473	+				-0.8
21,474	-				-0.8
21,490	-				-0.7
21,505	+				-0.7
21,505	+				-1.5
21,505	+				-1.2
21,506	-				-0.5
21,506	-				+1.0
21,506	-				-2.0
21,507	+				-1.2
21,507	+				-1.3
21,507	+				-2.2
21,508	-				-0.7
21,508	-				+0.4
21,508	-				-3.4
21,588	-		p5482_26	0.20	+2.2
21,607	+		p5482_26	0.25	-2.2
21,618	+		p5482_26	0.28	+0.3
21,618	+		p5482_26	0.28	-1.2
21,629	-		p5482_26	0.30	+0.1
21,640	-		p5482_26	0.33	+0.5
21,652	+		p5482_26	0.36	-0.8
21,652	+		p5482_26	0.36	-0.8
21,653	-		p5482_26	0.36	-0.5
21,653	-		p5482_26	0.36	-0.7
21,653	-		p5482_26	0.36	-3.0
21,653	-		p5482_26	0.36	-1.0
21,653	-		p5482_26	0.36	-1.4
21,655	+		p5482_26	0.37	-0.2
21,680	+		p5482_26	0.43	+0.6
21,722	+		p5482_26	0.54	-1.7
21,733	+		p5482_26	0.57	-0.8
21,734	-		p5482_26	0.57	+1.6
21,738	+		p5482_26	0.58	-0.8
21,738	+		p5482_26	0.58	+1.2
21,738	+		p5482_26	0.58	+0.4
21,739	-		p5482_26	0.58	-1.4
21,739	-		p5482_26	0.58	+0.6
21,739	-		p5482_26	0.58	-3.0
21,739	-		p5482_26	0.58	+0.7
21,739	-		p5482_26	0.58	-1.5
21,739	-		p5482_26	0.58	-1.0
21,788	+		p5482_26	0.70	-2.7
21,788	+		p5482_26	0.70	+0.4
21,796	+		p5482_26	0.72	-1.0
21,797	-		p5482_26	0.73	-1.0
21,808	+		p5482_26	0.76	-1.1
21,809	-		p5482_26	0.76	+1.9
21,826	+		p5482_26	0.80	-1.5
21,827	-		p5482_26	0.80	-0.4