Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0091

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0090 and katA are separated by 136 nucleotideskatA and DVUA0092 are separated by 218 nucleotidesDVUA0092 and DVUA0093 are separated by 188 nucleotides DVUA0090: DVUA0090 - membrane protein, putative (TIGR), at 122,486 to 123,358 DVUA0090 DVUA0091: katA - catalase (TIGR), at 123,495 to 124,952 katA DVUA0092: DVUA0092 - hypothetical protein (TIGR), at 125,171 to 125,650 DVUA0092 DVUA0093: DVUA0093 - chromate transport family protein (TIGR), at 125,839 to 127,176 DVUA0093 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1at 122.498 kb on + strandat 122.506 kb on - strandat 122.506 kb on - strandat 122.556 kb on + strandat 122.589 kb on - strand, within DVUA0090at 122.615 kb on - strand, within DVUA0090at 122.818 kb on - strand, within DVUA0090at 122.878 kb on - strand, within DVUA0090at 122.905 kb on + strand, within DVUA0090at 122.927 kb on + strand, within DVUA0090at 122.935 kb on - strand, within DVUA0090at 123.010 kb on + strand, within DVUA0090at 123.020 kb on + strand, within DVUA0090at 123.127 kb on + strand, within DVUA0090at 123.255 kb on - strand, within DVUA0090at 123.257 kb on - strand, within DVUA0090at 123.262 kb on - strand, within DVUA0090at 123.469 kb on + strandat 123.775 kb on - strand, within katAat 123.872 kb on + strand, within katAat 123.967 kb on - strand, within katAat 124.024 kb on - strand, within katAat 124.026 kb on + strand, within katAat 124.109 kb on + strand, within katAat 124.224 kb on + strand, within katAat 124.318 kb on - strand, within katAat 124.326 kb on - strand, within katAat 124.395 kb on + strand, within katAat 124.552 kb on - strand, within katAat 124.622 kb on + strand, within katAat 124.627 kb on - strand, within katAat 124.731 kb on + strand, within katAat 124.928 kb on - strandat 124.951 kb on + strandat 124.954 kb on - strandat 125.054 kb on + strandat 125.054 kb on + strandat 125.075 kb on - strandat 125.348 kb on + strand, within DVUA0092at 125.417 kb on - strand, within DVUA0092at 125.424 kb on + strand, within DVUA0092at 125.520 kb on - strand, within DVUA0092at 125.597 kb on - strand, within DVUA0092at 125.629 kb on - strandat 125.694 kb on + strandat 125.717 kb on + strandat 125.725 kb on - strandat 125.762 kb on + strandat 125.787 kb on - strandat 125.791 kb on + strandat 125.809 kb on - strandat 125.861 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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122,498 + -2.4
122,506 - -0.6
122,506 - +0.1
122,556 + +0.3
122,589 - DVUA0090 0.12 -0.1
122,615 - DVUA0090 0.15 +0.1
122,818 - DVUA0090 0.38 +0.2
122,878 - DVUA0090 0.45 +0.1
122,905 + DVUA0090 0.48 +1.2
122,927 + DVUA0090 0.51 -1.0
122,935 - DVUA0090 0.51 -2.2
123,010 + DVUA0090 0.60 -0.1
123,020 + DVUA0090 0.61 -0.2
123,127 + DVUA0090 0.73 -0.0
123,255 - DVUA0090 0.88 +0.3
123,257 - DVUA0090 0.88 -0.8
123,262 - DVUA0090 0.89 +0.0
123,469 + +0.1
123,775 - katA DVUA0091 0.19 +1.0
123,872 + katA DVUA0091 0.26 +0.2
123,967 - katA DVUA0091 0.32 +0.3
124,024 - katA DVUA0091 0.36 -0.1
124,026 + katA DVUA0091 0.36 -0.3
124,109 + katA DVUA0091 0.42 -0.3
124,224 + katA DVUA0091 0.50 -0.3
124,318 - katA DVUA0091 0.56 -0.8
124,326 - katA DVUA0091 0.57 -1.7
124,395 + katA DVUA0091 0.62 +0.2
124,552 - katA DVUA0091 0.72 +0.9
124,622 + katA DVUA0091 0.77 +0.2
124,627 - katA DVUA0091 0.78 +0.1
124,731 + katA DVUA0091 0.85 +0.3
124,928 - +0.7
124,951 + +0.2
124,954 - -0.9
125,054 + -0.5
125,054 + +1.7
125,075 - -0.2
125,348 + DVUA0092 0.37 +0.2
125,417 - DVUA0092 0.51 +0.8
125,424 + DVUA0092 0.53 -0.0
125,520 - DVUA0092 0.73 -0.4
125,597 - DVUA0092 0.89 -0.1
125,629 - -0.1
125,694 + +0.4
125,717 + -0.7
125,725 - -0.4
125,762 + -0.5
125,787 - -0.1
125,791 + -0.2
125,809 - -0.5
125,861 + -0.3

Or see this region's nucleotide sequence