Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0507

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0506 and DVU0507 are separated by 17 nucleotidesDVU0507 and infB are separated by 103 nucleotides DVU0506: DVU0506 - DHH family protein (TIGR), at 578,631 to 579,632 DVU0506 DVU0507: DVU0507 - conserved hypothetical protein (TIGR), at 579,650 to 579,940 DVU0507 DVU0508: infB - translation initiation factor IF-2 (TIGR), at 580,044 to 583,283 infB Position (kb) 579 580Strain fitness (log2 ratio) -1 0 1 2at 578.654 kb on - strandat 578.729 kb on - strandat 578.781 kb on - strand, within DVU0506at 578.846 kb on + strand, within DVU0506at 578.936 kb on - strand, within DVU0506at 579.160 kb on + strand, within DVU0506at 579.224 kb on + strand, within DVU0506at 579.372 kb on + strand, within DVU0506at 579.372 kb on + strand, within DVU0506at 579.388 kb on + strand, within DVU0506at 579.429 kb on - strand, within DVU0506at 579.429 kb on - strand, within DVU0506at 579.429 kb on - strand, within DVU0506at 579.677 kb on + strandat 579.717 kb on - strand, within DVU0507at 579.737 kb on + strand, within DVU0507at 579.853 kb on + strand, within DVU0507at 579.921 kb on - strandat 579.966 kb on - strandat 580.013 kb on - strandat 580.044 kb on + strandat 580.044 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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578,654 - +1.6
578,729 - -1.1
578,781 - DVU0506 0.15 +2.2
578,846 + DVU0506 0.21 -0.6
578,936 - DVU0506 0.30 -0.4
579,160 + DVU0506 0.53 -1.0
579,224 + DVU0506 0.59 -1.3
579,372 + DVU0506 0.74 -1.2
579,372 + DVU0506 0.74 +1.5
579,388 + DVU0506 0.76 -0.4
579,429 - DVU0506 0.80 +0.7
579,429 - DVU0506 0.80 -1.0
579,429 - DVU0506 0.80 -0.5
579,677 + +0.0
579,717 - DVU0507 0.23 +0.0
579,737 + DVU0507 0.30 +0.7
579,853 + DVU0507 0.70 +1.5
579,921 - -0.6
579,966 - -1.3
580,013 - -0.6
580,044 + -0.7
580,044 + +0.2

Or see this region's nucleotide sequence