Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0216 and DVU0217 are separated by 1 nucleotides DVU0217 and DVU0218 are separated by 8 nucleotides DVU0218 and DVU0219 are separated by 8 nucleotides DVU0219 and DVU0220 overlap by 8 nucleotides
DVU0216: DVU0216 - phage baseplate assembly protein V, putative (TIGR), at 256,925 to 257,563
DVU0216
DVU0217: DVU0217 - tail protein, putative (TIGR), at 257,565 to 258,041
DVU0217
DVU0218: DVU0218 - tail protein, putative (TIGR), at 258,050 to 259,111
DVU0218
DVU0219: DVU0219 - tail protein, putative (TIGR), at 259,120 to 259,746
DVU0219
DVU0220: DVU0220 - tail fiber protein, putative (TIGR), at 259,739 to 260,755
DVU0220
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.185 kb on + strand, within DVU0216 at 257.230 kb on + strand, within DVU0216 at 257.230 kb on + strand, within DVU0216 at 257.236 kb on - strand, within DVU0216 at 257.357 kb on + strand, within DVU0216 at 257.374 kb on - strand, within DVU0216 at 257.386 kb on + strand, within DVU0216 at 257.411 kb on - strand, within DVU0216 at 257.605 kb on + strand at 257.663 kb on - strand, within DVU0217 at 257.668 kb on - strand, within DVU0217 at 257.673 kb on - strand, within DVU0217 at 257.905 kb on + strand, within DVU0217 at 257.905 kb on + strand, within DVU0217 at 257.905 kb on + strand, within DVU0217 at 257.905 kb on + strand, within DVU0217 at 257.906 kb on - strand, within DVU0217 at 257.913 kb on - strand, within DVU0217 at 257.927 kb on + strand, within DVU0217 at 258.082 kb on + strand at 258.221 kb on + strand, within DVU0218 at 258.274 kb on + strand, within DVU0218 at 258.282 kb on - strand, within DVU0218 at 258.282 kb on - strand, within DVU0218 at 258.282 kb on - strand, within DVU0218 at 258.694 kb on + strand, within DVU0218 at 258.757 kb on - strand, within DVU0218 at 258.757 kb on - strand, within DVU0218 at 259.106 kb on + strand at 259.106 kb on + strand at 259.106 kb on + strand at 259.133 kb on - strand at 259.133 kb on - strand at 259.133 kb on - strand at 259.133 kb on - strand at 259.148 kb on - strand at 259.170 kb on + strand at 259.259 kb on + strand, within DVU0219 at 259.259 kb on + strand, within DVU0219 at 259.259 kb on + strand, within DVU0219 at 259.267 kb on - strand, within DVU0219 at 259.398 kb on + strand, within DVU0219 at 259.845 kb on - strand, within DVU0220 at 259.845 kb on - strand, within DVU0220 at 260.035 kb on - strand, within DVU0220 at 260.088 kb on - strand, within DVU0220
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 257,185 + DVU0216 0.41 +0.8 257,230 + DVU0216 0.48 -0.6 257,230 + DVU0216 0.48 -0.2 257,236 - DVU0216 0.49 +0.1 257,357 + DVU0216 0.68 +0.5 257,374 - DVU0216 0.70 -0.0 257,386 + DVU0216 0.72 -0.8 257,411 - DVU0216 0.76 -1.2 257,605 + +1.6 257,663 - DVU0217 0.21 -0.1 257,668 - DVU0217 0.22 -1.2 257,673 - DVU0217 0.23 +0.2 257,905 + DVU0217 0.71 +0.1 257,905 + DVU0217 0.71 -0.1 257,905 + DVU0217 0.71 -0.8 257,905 + DVU0217 0.71 -1.0 257,906 - DVU0217 0.71 -0.9 257,913 - DVU0217 0.73 +0.6 257,927 + DVU0217 0.76 -0.4 258,082 + -0.1 258,221 + DVU0218 0.16 +0.1 258,274 + DVU0218 0.21 +1.2 258,282 - DVU0218 0.22 +1.8 258,282 - DVU0218 0.22 -0.4 258,282 - DVU0218 0.22 -0.3 258,694 + DVU0218 0.61 +0.2 258,757 - DVU0218 0.67 +2.1 258,757 - DVU0218 0.67 +0.4 259,106 + +0.1 259,106 + +0.2 259,106 + -0.5 259,133 - -0.8 259,133 - -1.9 259,133 - +0.1 259,133 - -2.5 259,148 - +2.4 259,170 + -0.3 259,259 + DVU0219 0.22 +0.6 259,259 + DVU0219 0.22 -0.2 259,259 + DVU0219 0.22 +0.0 259,267 - DVU0219 0.23 -0.2 259,398 + DVU0219 0.44 +0.0 259,845 - DVU0220 0.10 -0.9 259,845 - DVU0220 0.10 +0.4 260,035 - DVU0220 0.29 -1.1 260,088 - DVU0220 0.34 -0.2
Or see this region's nucleotide sequence