Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0040

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0038 and DVU0039 are separated by 211 nucleotidesDVU0039 and DVU0040 are separated by 179 nucleotidesDVU0040 and DVU0041 are separated by 192 nucleotides DVU0038: DVU0038 - acyltransferase domain protein (TIGR), at 43,678 to 45,528 DVU0038 DVU0039: DVU0039 - C4-type zinc finger protein, DksA/TraR family (TIGR), at 45,740 to 46,270 DVU0039 DVU0040: DVU0040 - hypothetical protein (TIGR), at 46,450 to 47,064 DVU0040 DVU0041: DVU0041 - transglycosylase, SLT family (TIGR), at 47,257 to 49,020 DVU0041 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.452 kb on - strandat 45.605 kb on + strandat 45.605 kb on + strandat 45.672 kb on - strandat 45.680 kb on - strandat 45.687 kb on + strandat 45.733 kb on + strandat 45.750 kb on + strandat 45.753 kb on - strandat 45.850 kb on + strand, within DVU0039at 45.964 kb on - strand, within DVU0039at 45.992 kb on - strand, within DVU0039at 46.060 kb on - strand, within DVU0039at 46.062 kb on + strand, within DVU0039at 46.070 kb on - strand, within DVU0039at 46.070 kb on - strand, within DVU0039at 46.119 kb on + strand, within DVU0039at 46.130 kb on + strand, within DVU0039at 46.138 kb on - strand, within DVU0039at 46.138 kb on - strand, within DVU0039at 46.150 kb on + strand, within DVU0039at 46.165 kb on + strand, within DVU0039at 46.165 kb on + strand, within DVU0039at 46.165 kb on + strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.173 kb on - strand, within DVU0039at 46.211 kb on - strand, within DVU0039at 46.252 kb on - strandat 46.264 kb on + strandat 46.267 kb on - strandat 46.272 kb on - strandat 46.361 kb on - strandat 46.411 kb on + strandat 46.478 kb on + strandat 46.541 kb on + strand, within DVU0040at 46.554 kb on - strand, within DVU0040at 46.574 kb on - strand, within DVU0040at 46.620 kb on + strand, within DVU0040at 46.620 kb on + strand, within DVU0040at 46.667 kb on + strand, within DVU0040at 46.692 kb on - strand, within DVU0040at 46.728 kb on + strand, within DVU0040at 46.799 kb on - strand, within DVU0040at 46.826 kb on + strand, within DVU0040at 46.833 kb on + strand, within DVU0040at 46.905 kb on + strand, within DVU0040at 46.905 kb on + strand, within DVU0040at 46.905 kb on + strand, within DVU0040at 46.954 kb on + strand, within DVU0040at 46.959 kb on + strand, within DVU0040at 47.002 kb on - strand, within DVU0040at 47.035 kb on - strandat 47.054 kb on - strandat 47.150 kb on + strandat 47.273 kb on + strandat 47.290 kb on + strandat 47.317 kb on + strandat 47.345 kb on + strandat 47.353 kb on - strandat 47.375 kb on + strandat 47.375 kb on + strandat 47.375 kb on + strandat 47.391 kb on - strandat 47.430 kb on + strandat 47.430 kb on + strandat 47.430 kb on + strandat 47.430 kb on + strandat 47.438 kb on - strand, within DVU0041at 47.438 kb on - strand, within DVU0041at 47.502 kb on + strand, within DVU0041at 47.510 kb on - strand, within DVU0041at 47.513 kb on + strand, within DVU0041at 47.532 kb on - strand, within DVU0041at 47.534 kb on - strand, within DVU0041at 47.536 kb on - strand, within DVU0041at 47.541 kb on - strand, within DVU0041at 47.582 kb on - strand, within DVU0041at 47.635 kb on - strand, within DVU0041at 47.655 kb on + strand, within DVU0041at 47.663 kb on - strand, within DVU0041at 47.682 kb on + strand, within DVU0041at 47.703 kb on - strand, within DVU0041at 47.703 kb on - strand, within DVU0041at 47.742 kb on + strand, within DVU0041at 47.811 kb on - strand, within DVU0041at 47.818 kb on - strand, within DVU0041at 47.827 kb on - strand, within DVU0041at 47.851 kb on - strand, within DVU0041at 47.919 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.921 kb on + strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.929 kb on - strand, within DVU0041at 47.958 kb on - strand, within DVU0041at 47.971 kb on + strand, within DVU0041at 48.030 kb on + strand, within DVU0041at 48.038 kb on - strand, within DVU0041

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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45,452 - +0.3
45,605 + -1.1
45,605 + -1.1
45,672 - -0.9
45,680 - -1.0
45,687 + +0.2
45,733 + +0.1
45,750 + -0.7
45,753 - +0.5
45,850 + DVU0039 0.21 -1.8
45,964 - DVU0039 0.42 -0.2
45,992 - DVU0039 0.47 -0.8
46,060 - DVU0039 0.60 -1.2
46,062 + DVU0039 0.61 -0.2
46,070 - DVU0039 0.62 +0.1
46,070 - DVU0039 0.62 -0.5
46,119 + DVU0039 0.71 -0.4
46,130 + DVU0039 0.73 -0.3
46,138 - DVU0039 0.75 +0.4
46,138 - DVU0039 0.75 -0.5
46,150 + DVU0039 0.77 +0.2
46,165 + DVU0039 0.80 -1.1
46,165 + DVU0039 0.80 +0.1
46,165 + DVU0039 0.80 +0.7
46,173 - DVU0039 0.82 +0.4
46,173 - DVU0039 0.82 -0.2
46,173 - DVU0039 0.82 -0.9
46,173 - DVU0039 0.82 +0.8
46,173 - DVU0039 0.82 +0.2
46,211 - DVU0039 0.89 -0.1
46,252 - -0.1
46,264 + +0.3
46,267 - +0.2
46,272 - -0.4
46,361 - -0.9
46,411 + -0.1
46,478 + -0.2
46,541 + DVU0040 0.15 +1.3
46,554 - DVU0040 0.17 +0.3
46,574 - DVU0040 0.20 +0.3
46,620 + DVU0040 0.28 -0.2
46,620 + DVU0040 0.28 +0.9
46,667 + DVU0040 0.35 +0.9
46,692 - DVU0040 0.39 -0.4
46,728 + DVU0040 0.45 +1.6
46,799 - DVU0040 0.57 -1.9
46,826 + DVU0040 0.61 +0.2
46,833 + DVU0040 0.62 -1.0
46,905 + DVU0040 0.74 +1.5
46,905 + DVU0040 0.74 -0.1
46,905 + DVU0040 0.74 +0.1
46,954 + DVU0040 0.82 +0.1
46,959 + DVU0040 0.83 +0.0
47,002 - DVU0040 0.90 -0.0
47,035 - -0.2
47,054 - -0.1
47,150 + +0.2
47,273 + +0.3
47,290 + +0.1
47,317 + -0.0
47,345 + +1.1
47,353 - -0.6
47,375 + -0.1
47,375 + +0.5
47,375 + +0.6
47,391 - -0.2
47,430 + -1.4
47,430 + -0.6
47,430 + +0.4
47,430 + -0.8
47,438 - DVU0041 0.10 +0.3
47,438 - DVU0041 0.10 +0.0
47,502 + DVU0041 0.14 -0.5
47,510 - DVU0041 0.14 -0.1
47,513 + DVU0041 0.15 -0.8
47,532 - DVU0041 0.16 +1.8
47,534 - DVU0041 0.16 +0.4
47,536 - DVU0041 0.16 -0.2
47,541 - DVU0041 0.16 -0.9
47,582 - DVU0041 0.18 +0.8
47,635 - DVU0041 0.21 +0.0
47,655 + DVU0041 0.23 +0.1
47,663 - DVU0041 0.23 +0.3
47,682 + DVU0041 0.24 -1.2
47,703 - DVU0041 0.25 +0.8
47,703 - DVU0041 0.25 +0.1
47,742 + DVU0041 0.27 -0.1
47,811 - DVU0041 0.31 +0.3
47,818 - DVU0041 0.32 -1.9
47,827 - DVU0041 0.32 +0.2
47,851 - DVU0041 0.34 -0.1
47,919 + DVU0041 0.38 -0.2
47,921 + DVU0041 0.38 -0.4
47,921 + DVU0041 0.38 +0.2
47,921 + DVU0041 0.38 +0.2
47,921 + DVU0041 0.38 -0.2
47,921 + DVU0041 0.38 -1.8
47,921 + DVU0041 0.38 -0.5
47,921 + DVU0041 0.38 +0.0
47,921 + DVU0041 0.38 -1.2
47,921 + DVU0041 0.38 -1.4
47,921 + DVU0041 0.38 -0.2
47,929 - DVU0041 0.38 -0.1
47,929 - DVU0041 0.38 -1.7
47,929 - DVU0041 0.38 -1.1
47,929 - DVU0041 0.38 -0.0
47,929 - DVU0041 0.38 +0.1
47,929 - DVU0041 0.38 -0.4
47,929 - DVU0041 0.38 +0.2
47,929 - DVU0041 0.38 -0.2
47,958 - DVU0041 0.40 -1.1
47,971 + DVU0041 0.40 +0.3
48,030 + DVU0041 0.44 -0.1
48,038 - DVU0041 0.44 -0.3

Or see this region's nucleotide sequence