Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0033

Experiment: MoLS4 with L-Arginine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0031 and DVU0032 overlap by 11 nucleotidesDVU0032 and DVU0033 are separated by 266 nucleotidesDVU0033 and DVU0034 are separated by 147 nucleotides DVU0031: DVU0031 - AzlC family protein (TIGR), at 38,435 to 39,172 DVU0031 DVU0032: DVU0032 - conserved hypothetical protein (TIGR), at 39,162 to 39,497 DVU0032 DVU0033: DVU0033 - isochorismatase family protein (TIGR), at 39,764 to 40,378 DVU0033 DVU0034: DVU0034 - DSBA-like thioredoxin domain protein (TIGR), at 40,526 to 41,311 DVU0034 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 38.768 kb on + strand, within DVU0031at 38.776 kb on - strand, within DVU0031at 38.886 kb on - strand, within DVU0031at 38.893 kb on + strand, within DVU0031at 38.908 kb on - strand, within DVU0031at 38.915 kb on + strand, within DVU0031at 38.923 kb on - strand, within DVU0031at 38.941 kb on - strand, within DVU0031at 38.973 kb on + strand, within DVU0031at 38.998 kb on + strand, within DVU0031at 39.039 kb on - strand, within DVU0031at 39.043 kb on + strand, within DVU0031at 39.072 kb on + strand, within DVU0031at 39.083 kb on - strand, within DVU0031at 39.104 kb on + strandat 39.130 kb on + strandat 39.146 kb on + strandat 39.161 kb on + strandat 39.165 kb on - strandat 39.183 kb on + strandat 39.241 kb on - strand, within DVU0032at 39.265 kb on + strand, within DVU0032at 39.325 kb on + strand, within DVU0032at 39.364 kb on - strand, within DVU0032at 39.499 kb on - strandat 39.499 kb on - strandat 39.508 kb on + strandat 39.538 kb on - strandat 39.653 kb on + strandat 39.658 kb on + strandat 39.658 kb on + strandat 39.679 kb on + strandat 39.788 kb on - strandat 39.813 kb on + strandat 39.838 kb on - strand, within DVU0033at 39.912 kb on - strand, within DVU0033at 40.133 kb on + strand, within DVU0033at 40.141 kb on - strand, within DVU0033at 40.294 kb on + strand, within DVU0033at 40.295 kb on + strand, within DVU0033at 40.295 kb on + strand, within DVU0033at 40.302 kb on - strand, within DVU0033at 40.319 kb on + strandat 40.319 kb on + strandat 40.326 kb on + strandat 40.380 kb on - strandat 40.410 kb on + strandat 40.418 kb on - strandat 40.426 kb on - strandat 40.492 kb on + strandat 40.536 kb on - strandat 40.573 kb on + strandat 40.675 kb on + strand, within DVU0034at 40.685 kb on + strand, within DVU0034at 40.685 kb on + strand, within DVU0034at 40.693 kb on - strand, within DVU0034at 40.744 kb on + strand, within DVU0034at 40.744 kb on + strand, within DVU0034at 40.841 kb on + strand, within DVU0034at 40.946 kb on - strand, within DVU0034at 41.002 kb on - strand, within DVU0034at 41.004 kb on + strand, within DVU0034at 41.059 kb on + strand, within DVU0034at 41.073 kb on - strand, within DVU0034at 41.167 kb on + strand, within DVU0034at 41.207 kb on + strand, within DVU0034at 41.249 kb on - strandat 41.327 kb on - strandat 41.336 kb on + strandat 41.356 kb on + strandat 41.361 kb on - strandat 41.378 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
remove
38,768 + DVU0031 0.45 -1.5
38,776 - DVU0031 0.46 -0.0
38,886 - DVU0031 0.61 -1.5
38,893 + DVU0031 0.62 -0.1
38,908 - DVU0031 0.64 -0.2
38,915 + DVU0031 0.65 +0.2
38,923 - DVU0031 0.66 +0.3
38,941 - DVU0031 0.69 -0.2
38,973 + DVU0031 0.73 +1.0
38,998 + DVU0031 0.76 +0.9
39,039 - DVU0031 0.82 -0.2
39,043 + DVU0031 0.82 +0.4
39,072 + DVU0031 0.86 +0.4
39,083 - DVU0031 0.88 -1.5
39,104 + -2.1
39,130 + +0.5
39,146 + +0.6
39,161 + -0.7
39,165 - +0.9
39,183 + -1.3
39,241 - DVU0032 0.24 -1.7
39,265 + DVU0032 0.31 +0.1
39,325 + DVU0032 0.49 +0.1
39,364 - DVU0032 0.60 +0.1
39,499 - -0.5
39,499 - -0.4
39,508 + -0.1
39,538 - +0.4
39,653 + +1.8
39,658 + -2.5
39,658 + -0.1
39,679 + -0.5
39,788 - +1.2
39,813 + -0.7
39,838 - DVU0033 0.12 -0.3
39,912 - DVU0033 0.24 +1.0
40,133 + DVU0033 0.60 +0.1
40,141 - DVU0033 0.61 -1.1
40,294 + DVU0033 0.86 +2.3
40,295 + DVU0033 0.86 -0.1
40,295 + DVU0033 0.86 -0.7
40,302 - DVU0033 0.87 -0.5
40,319 + -0.1
40,319 + -0.3
40,326 + -1.6
40,380 - +0.8
40,410 + +0.3
40,418 - +0.0
40,426 - +0.7
40,492 + +0.1
40,536 - +0.0
40,573 + -0.9
40,675 + DVU0034 0.19 -0.3
40,685 + DVU0034 0.20 +0.1
40,685 + DVU0034 0.20 +0.4
40,693 - DVU0034 0.21 +0.2
40,744 + DVU0034 0.28 -0.1
40,744 + DVU0034 0.28 -0.3
40,841 + DVU0034 0.40 -1.2
40,946 - DVU0034 0.53 -1.9
41,002 - DVU0034 0.61 -0.4
41,004 + DVU0034 0.61 +0.5
41,059 + DVU0034 0.68 +0.9
41,073 - DVU0034 0.70 -0.2
41,167 + DVU0034 0.82 +0.1
41,207 + DVU0034 0.87 +0.3
41,249 - +0.6
41,327 - -0.3
41,336 + +0.6
41,356 + -0.2
41,361 - +0.2
41,378 - -0.9

Or see this region's nucleotide sequence