Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3153

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3152 and DVU3153 are separated by 435 nucleotidesDVU3153 and DVU3154 overlap by 4 nucleotides DVU3152: DVU3152 - sensory box histidine kinase (TIGR), at 3,304,918 to 3,306,579 DVU3152 DVU3153: DVU3153 - hypothetical protein (TIGR), at 3,307,015 to 3,307,134 DVU3153 DVU3154: DVU3154 - HAM1 family protein (TIGR), at 3,307,131 to 3,307,754 DVU3154 Position (kb) 3307 3308Strain fitness (log2 ratio) -2 -1 0 1 2at 3306.098 kb on + strand, within DVU3152at 3306.103 kb on - strand, within DVU3152at 3306.111 kb on - strand, within DVU3152at 3306.135 kb on - strand, within DVU3152at 3306.158 kb on + strand, within DVU3152at 3306.158 kb on + strand, within DVU3152at 3306.163 kb on + strand, within DVU3152at 3306.173 kb on + strand, within DVU3152at 3306.175 kb on + strand, within DVU3152at 3306.175 kb on + strand, within DVU3152at 3306.229 kb on - strand, within DVU3152at 3306.229 kb on - strand, within DVU3152at 3306.242 kb on - strand, within DVU3152at 3306.259 kb on + strand, within DVU3152at 3306.267 kb on - strand, within DVU3152at 3306.370 kb on - strand, within DVU3152at 3306.428 kb on + strandat 3306.428 kb on + strandat 3306.428 kb on + strandat 3306.436 kb on - strandat 3306.480 kb on - strandat 3306.573 kb on + strandat 3306.591 kb on + strandat 3306.599 kb on - strandat 3306.599 kb on - strandat 3306.634 kb on + strandat 3306.634 kb on - strandat 3306.659 kb on - strandat 3306.693 kb on + strandat 3306.693 kb on + strandat 3306.701 kb on - strandat 3306.709 kb on + strandat 3306.738 kb on + strandat 3306.746 kb on - strandat 3306.754 kb on + strandat 3306.768 kb on - strandat 3306.799 kb on + strandat 3306.799 kb on + strandat 3306.799 kb on + strandat 3306.799 kb on + strandat 3306.799 kb on + strandat 3306.855 kb on - strandat 3306.874 kb on + strandat 3306.882 kb on + strandat 3306.890 kb on - strandat 3306.927 kb on + strandat 3306.932 kb on + strandat 3306.940 kb on + strandat 3306.948 kb on - strandat 3306.950 kb on + strandat 3306.963 kb on - strandat 3307.020 kb on - strandat 3307.026 kb on + strandat 3307.053 kb on - strand, within DVU3153at 3307.058 kb on - strand, within DVU3153at 3307.083 kb on + strand, within DVU3153at 3307.096 kb on + strand, within DVU3153at 3307.124 kb on - strandat 3307.124 kb on - strandat 3307.127 kb on + strandat 3307.135 kb on - strandat 3307.758 kb on - strandat 3307.758 kb on - strandat 3307.785 kb on - strandat 3307.854 kb on - strandat 3307.887 kb on - strandat 3307.998 kb on + strandat 3308.018 kb on + strandat 3308.045 kb on - strandat 3308.045 kb on - strandat 3308.045 kb on - strandat 3308.045 kb on - strandat 3308.057 kb on + strandat 3308.071 kb on - strandat 3308.106 kb on + strandat 3308.117 kb on + strandat 3308.117 kb on + strandat 3308.117 kb on + strandat 3308.117 kb on + strandat 3308.125 kb on - strandat 3308.125 kb on - strandat 3308.125 kb on - strandat 3308.125 kb on - strandat 3308.130 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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3,306,098 + DVU3152 0.71 +0.1
3,306,103 - DVU3152 0.71 +1.7
3,306,111 - DVU3152 0.72 +1.7
3,306,135 - DVU3152 0.73 -0.2
3,306,158 + DVU3152 0.75 -0.1
3,306,158 + DVU3152 0.75 -0.6
3,306,163 + DVU3152 0.75 -0.3
3,306,173 + DVU3152 0.76 -0.7
3,306,175 + DVU3152 0.76 +0.2
3,306,175 + DVU3152 0.76 +0.1
3,306,229 - DVU3152 0.79 -1.9
3,306,229 - DVU3152 0.79 +0.3
3,306,242 - DVU3152 0.80 -1.0
3,306,259 + DVU3152 0.81 -0.0
3,306,267 - DVU3152 0.81 -0.1
3,306,370 - DVU3152 0.87 -1.6
3,306,428 + +1.6
3,306,428 + +0.2
3,306,428 + -0.2
3,306,436 - +0.2
3,306,480 - +0.2
3,306,573 + +0.2
3,306,591 + -1.0
3,306,599 - -0.3
3,306,599 - -0.6
3,306,634 + -0.3
3,306,634 - -0.1
3,306,659 - -0.7
3,306,693 + -0.3
3,306,693 + -1.5
3,306,701 - -0.8
3,306,709 + +0.1
3,306,738 + -0.8
3,306,746 - -1.9
3,306,754 + +0.0
3,306,768 - -0.3
3,306,799 + -1.5
3,306,799 + +1.4
3,306,799 + -0.9
3,306,799 + +0.1
3,306,799 + -0.2
3,306,855 - -1.0
3,306,874 + +0.1
3,306,882 + -0.9
3,306,890 - +1.7
3,306,927 + -0.2
3,306,932 + +0.3
3,306,940 + +0.3
3,306,948 - -0.0
3,306,950 + -0.2
3,306,963 - -0.0
3,307,020 - -1.0
3,307,026 + -0.0
3,307,053 - DVU3153 0.32 -0.3
3,307,058 - DVU3153 0.36 +0.1
3,307,083 + DVU3153 0.57 -0.3
3,307,096 + DVU3153 0.68 +2.4
3,307,124 - -0.4
3,307,124 - +0.1
3,307,127 + -0.0
3,307,135 - -1.2
3,307,758 - -1.3
3,307,758 - -0.9
3,307,785 - -0.3
3,307,854 - +0.0
3,307,887 - -0.0
3,307,998 + -0.2
3,308,018 + -0.4
3,308,045 - +0.3
3,308,045 - -0.2
3,308,045 - +0.8
3,308,045 - +0.3
3,308,057 + +0.8
3,308,071 - -1.0
3,308,106 + +0.1
3,308,117 + +0.2
3,308,117 + -0.6
3,308,117 + +0.2
3,308,117 + -0.2
3,308,125 - +0.2
3,308,125 - -0.1
3,308,125 - +0.3
3,308,125 - -0.9
3,308,130 + -1.0

Or see this region's nucleotide sequence