Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2806 and DVU2807 are separated by 19 nucleotides DVU2807 and DVU2808 overlap by 4 nucleotides DVU2808 and DVU2809 are separated by 210 nucleotides DVU2809 and DVU2810 are separated by 14 nucleotides
DVU2806: DVU2806 - MotA/TolQ/ExbB proton channel family protein (TIGR), at 2,910,477 to 2,911,226
DVU2806
DVU2807: DVU2807 - biopolymer transport protein, ExbD/TolR family (TIGR), at 2,911,246 to 2,911,656
DVU2807
DVU2808: DVU2808 - TonB domain protein (TIGR), at 2,911,653 to 2,912,162
DVU2808
DVU2809: DVU2809 - cytochrome c3 (TIGR), at 2,912,373 to 2,912,807
DVU2809
DVU2810: DVU2810 - formate dehydrogenase formation protein FdhE, putative (TIGR), at 2,912,822 to 2,913,769
DVU2810
Position (kb)
2911
2912
2913 Strain fitness (log2 ratio)
-1
0
1
2 at 2910.704 kb on + strand, within DVU2806 at 2910.770 kb on - strand, within DVU2806 at 2910.784 kb on + strand, within DVU2806 at 2910.799 kb on + strand, within DVU2806 at 2910.802 kb on - strand, within DVU2806 at 2910.855 kb on + strand, within DVU2806 at 2910.981 kb on + strand, within DVU2806 at 2911.046 kb on + strand, within DVU2806 at 2911.115 kb on - strand, within DVU2806 at 2911.208 kb on - strand at 2911.281 kb on - strand at 2911.290 kb on - strand, within DVU2807 at 2911.322 kb on + strand, within DVU2807 at 2911.374 kb on + strand, within DVU2807 at 2911.397 kb on - strand, within DVU2807 at 2911.474 kb on - strand, within DVU2807 at 2911.484 kb on - strand, within DVU2807 at 2911.562 kb on - strand, within DVU2807 at 2911.578 kb on + strand, within DVU2807 at 2911.826 kb on - strand, within DVU2808 at 2911.945 kb on + strand, within DVU2808 at 2911.970 kb on + strand, within DVU2808 at 2912.093 kb on - strand, within DVU2808 at 2912.093 kb on - strand, within DVU2808 at 2912.183 kb on + strand at 2912.191 kb on - strand at 2912.242 kb on + strand at 2912.245 kb on - strand at 2912.267 kb on + strand at 2912.277 kb on + strand at 2912.298 kb on + strand at 2912.549 kb on + strand, within DVU2809 at 2912.587 kb on + strand, within DVU2809 at 2912.617 kb on + strand, within DVU2809 at 2912.642 kb on - strand, within DVU2809 at 2912.655 kb on + strand, within DVU2809 at 2912.686 kb on - strand, within DVU2809 at 2912.800 kb on - strand at 2912.810 kb on + strand at 2912.813 kb on - strand at 2912.852 kb on - strand at 2912.877 kb on + strand at 2912.902 kb on + strand at 2912.912 kb on + strand at 2912.917 kb on + strand, within DVU2810 at 2912.925 kb on - strand, within DVU2810 at 2912.944 kb on + strand, within DVU2810 at 2912.944 kb on + strand, within DVU2810 at 2912.982 kb on - strand, within DVU2810 at 2912.982 kb on - strand, within DVU2810 at 2913.080 kb on + strand, within DVU2810 at 2913.080 kb on + strand, within DVU2810 at 2913.102 kb on + strand, within DVU2810
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 2,910,704 + DVU2806 0.30 -0.1 2,910,770 - DVU2806 0.39 -0.6 2,910,784 + DVU2806 0.41 -0.1 2,910,799 + DVU2806 0.43 -0.1 2,910,802 - DVU2806 0.43 -0.0 2,910,855 + DVU2806 0.50 -0.2 2,910,981 + DVU2806 0.67 +0.4 2,911,046 + DVU2806 0.76 -0.2 2,911,115 - DVU2806 0.85 +0.9 2,911,208 - -0.1 2,911,281 - +0.4 2,911,290 - DVU2807 0.11 -0.2 2,911,322 + DVU2807 0.18 -0.3 2,911,374 + DVU2807 0.31 +0.2 2,911,397 - DVU2807 0.37 +0.5 2,911,474 - DVU2807 0.55 -1.0 2,911,484 - DVU2807 0.58 -0.5 2,911,562 - DVU2807 0.77 +0.0 2,911,578 + DVU2807 0.81 -0.1 2,911,826 - DVU2808 0.34 +0.5 2,911,945 + DVU2808 0.57 +0.3 2,911,970 + DVU2808 0.62 -0.1 2,912,093 - DVU2808 0.86 -0.5 2,912,093 - DVU2808 0.86 -0.0 2,912,183 + -0.2 2,912,191 - +0.6 2,912,242 + -0.3 2,912,245 - -0.2 2,912,267 + -1.0 2,912,277 + -0.2 2,912,298 + -0.3 2,912,549 + DVU2809 0.40 +0.8 2,912,587 + DVU2809 0.49 -1.2 2,912,617 + DVU2809 0.56 +0.2 2,912,642 - DVU2809 0.62 +1.9 2,912,655 + DVU2809 0.65 -0.6 2,912,686 - DVU2809 0.72 +0.1 2,912,800 - -0.1 2,912,810 + -0.2 2,912,813 - +0.0 2,912,852 - -1.1 2,912,877 + -0.1 2,912,902 + -0.1 2,912,912 + -0.1 2,912,917 + DVU2810 0.10 -0.2 2,912,925 - DVU2810 0.11 -0.3 2,912,944 + DVU2810 0.13 +0.1 2,912,944 + DVU2810 0.13 +1.5 2,912,982 - DVU2810 0.17 +0.1 2,912,982 - DVU2810 0.17 -1.2 2,913,080 + DVU2810 0.27 -0.1 2,913,080 + DVU2810 0.27 -0.3 2,913,102 + DVU2810 0.30 -0.1
Or see this region's nucleotide sequence