Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2808

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2806 and DVU2807 are separated by 19 nucleotidesDVU2807 and DVU2808 overlap by 4 nucleotidesDVU2808 and DVU2809 are separated by 210 nucleotidesDVU2809 and DVU2810 are separated by 14 nucleotides DVU2806: DVU2806 - MotA/TolQ/ExbB proton channel family protein (TIGR), at 2,910,477 to 2,911,226 DVU2806 DVU2807: DVU2807 - biopolymer transport protein, ExbD/TolR family (TIGR), at 2,911,246 to 2,911,656 DVU2807 DVU2808: DVU2808 - TonB domain protein (TIGR), at 2,911,653 to 2,912,162 DVU2808 DVU2809: DVU2809 - cytochrome c3 (TIGR), at 2,912,373 to 2,912,807 DVU2809 DVU2810: DVU2810 - formate dehydrogenase formation protein FdhE, putative (TIGR), at 2,912,822 to 2,913,769 DVU2810 Position (kb) 2911 2912 2913Strain fitness (log2 ratio) -1 0 1 2at 2910.704 kb on + strand, within DVU2806at 2910.770 kb on - strand, within DVU2806at 2910.784 kb on + strand, within DVU2806at 2910.799 kb on + strand, within DVU2806at 2910.802 kb on - strand, within DVU2806at 2910.855 kb on + strand, within DVU2806at 2910.981 kb on + strand, within DVU2806at 2911.046 kb on + strand, within DVU2806at 2911.115 kb on - strand, within DVU2806at 2911.208 kb on - strandat 2911.281 kb on - strandat 2911.290 kb on - strand, within DVU2807at 2911.322 kb on + strand, within DVU2807at 2911.374 kb on + strand, within DVU2807at 2911.397 kb on - strand, within DVU2807at 2911.474 kb on - strand, within DVU2807at 2911.484 kb on - strand, within DVU2807at 2911.562 kb on - strand, within DVU2807at 2911.578 kb on + strand, within DVU2807at 2911.826 kb on - strand, within DVU2808at 2911.945 kb on + strand, within DVU2808at 2911.970 kb on + strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.183 kb on + strandat 2912.191 kb on - strandat 2912.242 kb on + strandat 2912.245 kb on - strandat 2912.267 kb on + strandat 2912.277 kb on + strandat 2912.298 kb on + strandat 2912.549 kb on + strand, within DVU2809at 2912.587 kb on + strand, within DVU2809at 2912.617 kb on + strand, within DVU2809at 2912.642 kb on - strand, within DVU2809at 2912.655 kb on + strand, within DVU2809at 2912.686 kb on - strand, within DVU2809at 2912.800 kb on - strandat 2912.810 kb on + strandat 2912.813 kb on - strandat 2912.852 kb on - strandat 2912.877 kb on + strandat 2912.902 kb on + strandat 2912.912 kb on + strandat 2912.917 kb on + strand, within DVU2810at 2912.925 kb on - strand, within DVU2810at 2912.944 kb on + strand, within DVU2810at 2912.944 kb on + strand, within DVU2810at 2912.982 kb on - strand, within DVU2810at 2912.982 kb on - strand, within DVU2810at 2913.080 kb on + strand, within DVU2810at 2913.080 kb on + strand, within DVU2810at 2913.102 kb on + strand, within DVU2810

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,910,704 + DVU2806 0.30 -0.1
2,910,770 - DVU2806 0.39 -0.6
2,910,784 + DVU2806 0.41 -0.1
2,910,799 + DVU2806 0.43 -0.1
2,910,802 - DVU2806 0.43 -0.0
2,910,855 + DVU2806 0.50 -0.2
2,910,981 + DVU2806 0.67 +0.4
2,911,046 + DVU2806 0.76 -0.2
2,911,115 - DVU2806 0.85 +0.9
2,911,208 - -0.1
2,911,281 - +0.4
2,911,290 - DVU2807 0.11 -0.2
2,911,322 + DVU2807 0.18 -0.3
2,911,374 + DVU2807 0.31 +0.2
2,911,397 - DVU2807 0.37 +0.5
2,911,474 - DVU2807 0.55 -1.0
2,911,484 - DVU2807 0.58 -0.5
2,911,562 - DVU2807 0.77 +0.0
2,911,578 + DVU2807 0.81 -0.1
2,911,826 - DVU2808 0.34 +0.5
2,911,945 + DVU2808 0.57 +0.3
2,911,970 + DVU2808 0.62 -0.1
2,912,093 - DVU2808 0.86 -0.5
2,912,093 - DVU2808 0.86 -0.0
2,912,183 + -0.2
2,912,191 - +0.6
2,912,242 + -0.3
2,912,245 - -0.2
2,912,267 + -1.0
2,912,277 + -0.2
2,912,298 + -0.3
2,912,549 + DVU2809 0.40 +0.8
2,912,587 + DVU2809 0.49 -1.2
2,912,617 + DVU2809 0.56 +0.2
2,912,642 - DVU2809 0.62 +1.9
2,912,655 + DVU2809 0.65 -0.6
2,912,686 - DVU2809 0.72 +0.1
2,912,800 - -0.1
2,912,810 + -0.2
2,912,813 - +0.0
2,912,852 - -1.1
2,912,877 + -0.1
2,912,902 + -0.1
2,912,912 + -0.1
2,912,917 + DVU2810 0.10 -0.2
2,912,925 - DVU2810 0.11 -0.3
2,912,944 + DVU2810 0.13 +0.1
2,912,944 + DVU2810 0.13 +1.5
2,912,982 - DVU2810 0.17 +0.1
2,912,982 - DVU2810 0.17 -1.2
2,913,080 + DVU2810 0.27 -0.1
2,913,080 + DVU2810 0.27 -0.3
2,913,102 + DVU2810 0.30 -0.1

Or see this region's nucleotide sequence