Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2737

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2736 and DVU2737 are separated by 333 nucleotidesDVU2737 and DVU2738 are separated by 237 nucleotides DVU2736: DVU2736 - hypothetical protein (TIGR), at 2,837,699 to 2,838,208 DVU2736 DVU2737: DVU2737 - RNA methyltransferase, TrmH family (TIGR), at 2,838,542 to 2,839,306 DVU2737 DVU2738: DVU2738 - methyl-accepting chemotaxis protein (TIGR), at 2,839,544 to 2,841,949 DVU2738 Position (kb) 2838 2839 2840Strain fitness (log2 ratio) -2 -1 0 1at 2837.557 kb on + strandat 2837.577 kb on + strandat 2837.585 kb on - strandat 2837.585 kb on - strandat 2837.601 kb on - strandat 2837.623 kb on + strandat 2837.751 kb on + strand, within DVU2736at 2837.751 kb on + strand, within DVU2736at 2837.753 kb on - strand, within DVU2736at 2837.939 kb on - strand, within DVU2736at 2837.970 kb on - strand, within DVU2736at 2838.030 kb on - strand, within DVU2736at 2838.071 kb on + strand, within DVU2736at 2838.101 kb on - strand, within DVU2736at 2838.225 kb on + strandat 2838.352 kb on - strandat 2838.362 kb on + strandat 2838.363 kb on + strandat 2838.391 kb on + strandat 2838.501 kb on + strandat 2838.512 kb on + strandat 2838.515 kb on - strandat 2838.560 kb on - strandat 2838.605 kb on + strandat 2838.636 kb on + strand, within DVU2737at 2838.651 kb on + strand, within DVU2737at 2838.720 kb on + strand, within DVU2737at 2838.720 kb on + strand, within DVU2737at 2838.720 kb on + strand, within DVU2737at 2838.729 kb on - strand, within DVU2737at 2838.775 kb on + strand, within DVU2737at 2838.910 kb on - strand, within DVU2737at 2838.978 kb on + strand, within DVU2737at 2838.981 kb on - strand, within DVU2737at 2839.124 kb on - strand, within DVU2737at 2839.239 kb on + strandat 2839.279 kb on + strandat 2839.308 kb on - strandat 2839.412 kb on - strandat 2839.459 kb on + strandat 2839.459 kb on + strandat 2839.459 kb on + strandat 2839.467 kb on - strandat 2839.505 kb on + strandat 2839.513 kb on - strandat 2839.514 kb on - strandat 2839.601 kb on - strandat 2839.626 kb on - strandat 2839.640 kb on + strandat 2839.648 kb on - strandat 2839.702 kb on + strandat 2839.702 kb on + strandat 2839.715 kb on + strandat 2839.777 kb on - strandat 2839.813 kb on + strand, within DVU2738at 2839.821 kb on - strand, within DVU2738at 2839.873 kb on + strand, within DVU2738at 2839.873 kb on + strand, within DVU2738at 2839.995 kb on - strand, within DVU2738at 2840.109 kb on - strand, within DVU2738at 2840.116 kb on + strand, within DVU2738at 2840.124 kb on - strand, within DVU2738at 2840.289 kb on + strand, within DVU2738

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,837,557 + +1.6
2,837,577 + +0.1
2,837,585 - -1.1
2,837,585 - +0.0
2,837,601 - +0.3
2,837,623 + +0.1
2,837,751 + DVU2736 0.10 -1.2
2,837,751 + DVU2736 0.10 -1.9
2,837,753 - DVU2736 0.11 -0.4
2,837,939 - DVU2736 0.47 +0.1
2,837,970 - DVU2736 0.53 -2.1
2,838,030 - DVU2736 0.65 +0.1
2,838,071 + DVU2736 0.73 +0.3
2,838,101 - DVU2736 0.79 +0.1
2,838,225 + -0.2
2,838,352 - +0.3
2,838,362 + +0.9
2,838,363 + +1.5
2,838,391 + -1.1
2,838,501 + +1.0
2,838,512 + +0.5
2,838,515 - +1.5
2,838,560 - -0.5
2,838,605 + -0.8
2,838,636 + DVU2737 0.12 +0.9
2,838,651 + DVU2737 0.14 -0.0
2,838,720 + DVU2737 0.23 -0.4
2,838,720 + DVU2737 0.23 +0.0
2,838,720 + DVU2737 0.23 -0.4
2,838,729 - DVU2737 0.24 -0.3
2,838,775 + DVU2737 0.30 +0.2
2,838,910 - DVU2737 0.48 -0.3
2,838,978 + DVU2737 0.57 +1.1
2,838,981 - DVU2737 0.57 -0.1
2,839,124 - DVU2737 0.76 +0.5
2,839,239 + -0.5
2,839,279 + +0.9
2,839,308 - -0.1
2,839,412 - -0.2
2,839,459 + +0.1
2,839,459 + -0.5
2,839,459 + +0.5
2,839,467 - -1.2
2,839,505 + -0.3
2,839,513 - -1.4
2,839,514 - -0.2
2,839,601 - -0.8
2,839,626 - -0.7
2,839,640 + -0.7
2,839,648 - +0.3
2,839,702 + -0.1
2,839,702 + -2.3
2,839,715 + -0.2
2,839,777 - +0.5
2,839,813 + DVU2738 0.11 +0.2
2,839,821 - DVU2738 0.12 -0.0
2,839,873 + DVU2738 0.14 -0.6
2,839,873 + DVU2738 0.14 +0.2
2,839,995 - DVU2738 0.19 -0.0
2,840,109 - DVU2738 0.23 -0.2
2,840,116 + DVU2738 0.24 +0.7
2,840,124 - DVU2738 0.24 +0.1
2,840,289 + DVU2738 0.31 -0.5

Or see this region's nucleotide sequence