Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2728 and DVU2729 overlap by 4 nucleotides DVU2729 and svQ are separated by 83 nucleotides svQ and DVU2731 are separated by 9 nucleotides DVU2731 and DVU2732 are separated by 300 nucleotides
DVU2728: DVU2728 - tail protein, putative (TIGR), at 2,829,939 to 2,831,000
DVU2728
DVU2729: DVU2729 - tail protein, putative (TIGR), at 2,830,997 to 2,831,590
DVU2729
DVU2730: svQ - tail fiber protein, putative (TIGR), at 2,831,674 to 2,832,564
svQ
DVU2731: DVU2731 - tail fiber assembly protein, putative (TIGR), at 2,832,574 to 2,833,113
DVU2731
DVU2732: DVU2732 - conserved hypothetical protein (TIGR), at 2,833,414 to 2,833,614
DVU2732
Position (kb)
2831
2832
2833 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2830.789 kb on + strand, within DVU2728 at 2830.789 kb on + strand, within DVU2728 at 2830.828 kb on + strand, within DVU2728 at 2830.915 kb on - strand at 2831.116 kb on - strand, within DVU2729 at 2831.482 kb on - strand, within DVU2729 at 2831.642 kb on - strand at 2831.742 kb on - strand at 2831.750 kb on + strand at 2831.765 kb on - strand, within svQ at 2831.772 kb on + strand, within svQ at 2831.829 kb on + strand, within svQ at 2831.829 kb on + strand, within svQ at 2831.858 kb on - strand, within svQ at 2831.962 kb on - strand, within svQ at 2832.011 kb on + strand, within svQ at 2832.019 kb on - strand, within svQ at 2832.067 kb on - strand, within svQ at 2832.069 kb on - strand, within svQ at 2832.088 kb on - strand, within svQ at 2832.145 kb on - strand, within svQ at 2832.145 kb on - strand, within svQ at 2832.171 kb on + strand, within svQ at 2832.179 kb on - strand, within svQ at 2832.186 kb on + strand, within svQ at 2832.221 kb on + strand, within svQ at 2832.221 kb on + strand, within svQ at 2832.227 kb on - strand, within svQ at 2832.229 kb on - strand, within svQ at 2832.229 kb on - strand, within svQ at 2832.290 kb on + strand, within svQ at 2832.321 kb on - strand, within svQ at 2832.325 kb on + strand, within svQ at 2832.433 kb on + strand, within svQ at 2832.453 kb on + strand, within svQ at 2832.461 kb on - strand, within svQ at 2832.570 kb on + strand at 2832.615 kb on + strand at 2832.615 kb on + strand at 2832.655 kb on + strand, within DVU2731 at 2832.684 kb on + strand, within DVU2731 at 2832.686 kb on + strand, within DVU2731 at 2832.686 kb on + strand, within DVU2731 at 2832.694 kb on - strand, within DVU2731 at 2832.711 kb on - strand, within DVU2731 at 2832.789 kb on + strand, within DVU2731 at 2832.789 kb on + strand, within DVU2731 at 2832.789 kb on + strand, within DVU2731 at 2832.789 kb on + strand, within DVU2731 at 2832.789 kb on + strand, within DVU2731 at 2832.842 kb on + strand, within DVU2731 at 2832.864 kb on + strand, within DVU2731 at 2832.991 kb on - strand, within DVU2731 at 2833.042 kb on - strand, within DVU2731 at 2833.121 kb on - strand at 2833.285 kb on + strand at 2833.306 kb on + strand at 2833.314 kb on - strand at 2833.346 kb on + strand at 2833.351 kb on + strand at 2833.351 kb on + strand at 2833.351 kb on + strand at 2833.356 kb on + strand at 2833.364 kb on - strand at 2833.364 kb on - strand at 2833.364 kb on - strand at 2833.364 kb on - strand at 2833.491 kb on - strand, within DVU2732 at 2833.492 kb on - strand, within DVU2732 at 2833.492 kb on - strand, within DVU2732 at 2833.492 kb on - strand, within DVU2732 at 2833.519 kb on + strand, within DVU2732 at 2833.527 kb on - strand, within DVU2732
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 2,830,789 + DVU2728 0.80 +0.1 2,830,789 + DVU2728 0.80 -1.3 2,830,828 + DVU2728 0.84 +2.5 2,830,915 - +0.9 2,831,116 - DVU2729 0.20 +0.2 2,831,482 - DVU2729 0.82 -0.7 2,831,642 - +0.0 2,831,742 - -0.8 2,831,750 + -0.1 2,831,765 - svQ DVU2730 0.10 +0.2 2,831,772 + svQ DVU2730 0.11 +1.1 2,831,829 + svQ DVU2730 0.17 +0.1 2,831,829 + svQ DVU2730 0.17 -0.0 2,831,858 - svQ DVU2730 0.21 -0.0 2,831,962 - svQ DVU2730 0.32 -0.1 2,832,011 + svQ DVU2730 0.38 -1.0 2,832,019 - svQ DVU2730 0.39 +0.3 2,832,067 - svQ DVU2730 0.44 -0.1 2,832,069 - svQ DVU2730 0.44 +0.3 2,832,088 - svQ DVU2730 0.46 -0.0 2,832,145 - svQ DVU2730 0.53 +0.3 2,832,145 - svQ DVU2730 0.53 -0.1 2,832,171 + svQ DVU2730 0.56 -0.2 2,832,179 - svQ DVU2730 0.57 +0.5 2,832,186 + svQ DVU2730 0.57 +1.5 2,832,221 + svQ DVU2730 0.61 -0.3 2,832,221 + svQ DVU2730 0.61 +1.5 2,832,227 - svQ DVU2730 0.62 -0.3 2,832,229 - svQ DVU2730 0.62 +0.0 2,832,229 - svQ DVU2730 0.62 -0.2 2,832,290 + svQ DVU2730 0.69 -0.0 2,832,321 - svQ DVU2730 0.73 +0.8 2,832,325 + svQ DVU2730 0.73 -0.4 2,832,433 + svQ DVU2730 0.85 +0.1 2,832,453 + svQ DVU2730 0.87 -0.2 2,832,461 - svQ DVU2730 0.88 +0.4 2,832,570 + -1.2 2,832,615 + -1.1 2,832,615 + -0.3 2,832,655 + DVU2731 0.15 +0.0 2,832,684 + DVU2731 0.20 -0.1 2,832,686 + DVU2731 0.21 +0.0 2,832,686 + DVU2731 0.21 -0.3 2,832,694 - DVU2731 0.22 -1.8 2,832,711 - DVU2731 0.25 -0.8 2,832,789 + DVU2731 0.40 -0.1 2,832,789 + DVU2731 0.40 -1.1 2,832,789 + DVU2731 0.40 -0.5 2,832,789 + DVU2731 0.40 +0.5 2,832,789 + DVU2731 0.40 -0.1 2,832,842 + DVU2731 0.50 +0.5 2,832,864 + DVU2731 0.54 +0.1 2,832,991 - DVU2731 0.77 -0.0 2,833,042 - DVU2731 0.87 -0.3 2,833,121 - -1.6 2,833,285 + -0.7 2,833,306 + +0.0 2,833,314 - -0.3 2,833,346 + -0.1 2,833,351 + -2.2 2,833,351 + +0.5 2,833,351 + +1.5 2,833,356 + +2.5 2,833,364 - -0.7 2,833,364 - -0.7 2,833,364 - +0.5 2,833,364 - +0.6 2,833,491 - DVU2732 0.38 -0.9 2,833,492 - DVU2732 0.39 -1.0 2,833,492 - DVU2732 0.39 -0.9 2,833,492 - DVU2732 0.39 -0.2 2,833,519 + DVU2732 0.52 -0.2 2,833,527 - DVU2732 0.56 +0.2
Or see this region's nucleotide sequence