Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2634

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2633 and DVU2634 are separated by 36 nucleotidesDVU2634 and DVU2635 are separated by 187 nucleotides DVU2633: DVU2633 - transcriptional regulator, putative (TIGR), at 2,748,831 to 2,749,565 DVU2633 DVU2634: DVU2634 - hypothetical protein (TIGR), at 2,749,602 to 2,749,853 DVU2634 DVU2635: DVU2635 - glycosyl transferase, group 1 family protein (TIGR), at 2,750,041 to 2,751,174 DVU2635 Position (kb) 2749 2750Strain fitness (log2 ratio) -2 -1 0 1 2at 2748.606 kb on - strandat 2748.608 kb on + strandat 2748.616 kb on - strandat 2748.626 kb on + strandat 2748.626 kb on + strandat 2748.632 kb on - strandat 2748.707 kb on - strandat 2748.717 kb on - strandat 2749.658 kb on + strand, within DVU2634at 2749.770 kb on + strand, within DVU2634at 2749.790 kb on + strand, within DVU2634at 2749.847 kb on + strandat 2749.855 kb on - strandat 2749.900 kb on - strandat 2749.961 kb on - strandat 2749.961 kb on - strandat 2750.010 kb on + strandat 2750.010 kb on + strandat 2750.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,748,606 - -0.0
2,748,608 + +0.5
2,748,616 - +1.9
2,748,626 + -0.2
2,748,626 + +1.2
2,748,632 - -0.5
2,748,707 - -0.1
2,748,717 - -0.2
2,749,658 + DVU2634 0.22 -0.3
2,749,770 + DVU2634 0.67 -1.1
2,749,790 + DVU2634 0.75 -1.6
2,749,847 + +0.6
2,749,855 - -0.0
2,749,900 - -0.0
2,749,961 - +0.9
2,749,961 - +0.6
2,750,010 + -2.0
2,750,010 + -0.2
2,750,018 - -0.3

Or see this region's nucleotide sequence