Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2619 and DVU2620 are separated by 100 nucleotides DVU2620 and DVU2621 are separated by 282 nucleotides
DVU2619: DVU2619 - conserved hypothetical protein (TIGR), at 2,739,486 to 2,740,214
DVU2619
DVU2620: DVU2620 - conserved hypothetical protein (TIGR), at 2,740,315 to 2,741,475
DVU2620
DVU2621: DVU2621 - hypothetical protein (TIGR), at 2,741,758 to 2,742,570
DVU2621
Position (kb)
2740
2741
2742 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2739.328 kb on + strand at 2739.353 kb on - strand at 2739.430 kb on - strand at 2739.465 kb on + strand at 2739.522 kb on - strand at 2739.615 kb on + strand, within DVU2619 at 2739.680 kb on - strand, within DVU2619 at 2739.776 kb on - strand, within DVU2619 at 2739.781 kb on + strand, within DVU2619 at 2739.817 kb on - strand, within DVU2619 at 2739.819 kb on - strand, within DVU2619 at 2739.819 kb on - strand, within DVU2619 at 2739.829 kb on + strand, within DVU2619 at 2740.048 kb on + strand, within DVU2619 at 2740.056 kb on - strand, within DVU2619 at 2740.149 kb on - strand at 2740.163 kb on - strand at 2740.164 kb on + strand at 2740.237 kb on + strand at 2740.315 kb on - strand at 2740.352 kb on - strand at 2740.367 kb on - strand at 2740.397 kb on + strand at 2740.397 kb on + strand at 2740.405 kb on - strand at 2740.500 kb on - strand, within DVU2620 at 2740.530 kb on - strand, within DVU2620 at 2740.539 kb on - strand, within DVU2620 at 2740.579 kb on + strand, within DVU2620 at 2740.579 kb on + strand, within DVU2620 at 2740.581 kb on + strand, within DVU2620 at 2740.581 kb on + strand, within DVU2620 at 2740.581 kb on + strand, within DVU2620 at 2740.589 kb on - strand, within DVU2620 at 2740.637 kb on + strand, within DVU2620 at 2740.669 kb on + strand, within DVU2620 at 2740.670 kb on + strand, within DVU2620 at 2740.707 kb on + strand, within DVU2620 at 2740.707 kb on + strand, within DVU2620 at 2740.806 kb on - strand, within DVU2620 at 2740.827 kb on + strand, within DVU2620 at 2740.835 kb on - strand, within DVU2620 at 2740.858 kb on - strand, within DVU2620 at 2740.858 kb on - strand, within DVU2620 at 2740.897 kb on + strand, within DVU2620 at 2740.905 kb on - strand, within DVU2620 at 2740.970 kb on + strand, within DVU2620 at 2741.041 kb on + strand, within DVU2620 at 2741.090 kb on + strand, within DVU2620 at 2741.143 kb on + strand, within DVU2620 at 2741.235 kb on + strand, within DVU2620 at 2741.254 kb on - strand, within DVU2620 at 2741.315 kb on - strand, within DVU2620 at 2741.421 kb on + strand at 2741.469 kb on + strand at 2741.477 kb on - strand at 2741.584 kb on + strand at 2741.592 kb on + strand at 2741.739 kb on - strand at 2741.810 kb on + strand at 2741.810 kb on + strand at 2741.810 kb on + strand at 2741.829 kb on - strand at 2741.926 kb on + strand, within DVU2621 at 2742.016 kb on + strand, within DVU2621 at 2742.024 kb on - strand, within DVU2621 at 2742.073 kb on - strand, within DVU2621 at 2742.203 kb on - strand, within DVU2621 at 2742.348 kb on - strand, within DVU2621 at 2742.375 kb on - strand, within DVU2621 at 2742.397 kb on + strand, within DVU2621 at 2742.452 kb on - strand, within DVU2621 at 2742.454 kb on + strand, within DVU2621 at 2742.464 kb on + strand, within DVU2621 at 2742.467 kb on - strand, within DVU2621 at 2742.467 kb on - strand, within DVU2621
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 2,739,328 + -0.2 2,739,353 - -0.2 2,739,430 - +0.1 2,739,465 + +0.3 2,739,522 - +0.1 2,739,615 + DVU2619 0.18 -0.1 2,739,680 - DVU2619 0.27 -0.3 2,739,776 - DVU2619 0.40 +1.2 2,739,781 + DVU2619 0.40 -0.7 2,739,817 - DVU2619 0.45 +0.1 2,739,819 - DVU2619 0.46 +0.1 2,739,819 - DVU2619 0.46 +0.5 2,739,829 + DVU2619 0.47 +0.5 2,740,048 + DVU2619 0.77 +0.1 2,740,056 - DVU2619 0.78 -0.1 2,740,149 - +0.3 2,740,163 - -0.0 2,740,164 + -0.4 2,740,237 + +0.1 2,740,315 - -0.3 2,740,352 - -0.2 2,740,367 - -0.3 2,740,397 + +0.3 2,740,397 + +0.1 2,740,405 - +1.2 2,740,500 - DVU2620 0.16 +0.6 2,740,530 - DVU2620 0.19 -0.1 2,740,539 - DVU2620 0.19 -0.1 2,740,579 + DVU2620 0.23 -1.0 2,740,579 + DVU2620 0.23 +1.5 2,740,581 + DVU2620 0.23 +0.0 2,740,581 + DVU2620 0.23 -0.4 2,740,581 + DVU2620 0.23 +0.1 2,740,589 - DVU2620 0.24 +0.2 2,740,637 + DVU2620 0.28 +1.2 2,740,669 + DVU2620 0.30 +0.5 2,740,670 + DVU2620 0.31 -1.2 2,740,707 + DVU2620 0.34 -0.7 2,740,707 + DVU2620 0.34 -1.0 2,740,806 - DVU2620 0.42 +0.2 2,740,827 + DVU2620 0.44 -0.3 2,740,835 - DVU2620 0.45 +0.2 2,740,858 - DVU2620 0.47 -0.4 2,740,858 - DVU2620 0.47 +0.2 2,740,897 + DVU2620 0.50 -0.8 2,740,905 - DVU2620 0.51 +0.3 2,740,970 + DVU2620 0.56 +3.0 2,741,041 + DVU2620 0.63 +0.0 2,741,090 + DVU2620 0.67 +0.9 2,741,143 + DVU2620 0.71 -0.4 2,741,235 + DVU2620 0.79 +0.1 2,741,254 - DVU2620 0.81 -0.1 2,741,315 - DVU2620 0.86 +0.7 2,741,421 + -0.9 2,741,469 + -0.6 2,741,477 - +0.2 2,741,584 + -0.9 2,741,592 + +0.2 2,741,739 - +0.0 2,741,810 + -0.2 2,741,810 + +0.0 2,741,810 + -0.4 2,741,829 - -1.3 2,741,926 + DVU2621 0.21 -0.2 2,742,016 + DVU2621 0.32 -0.2 2,742,024 - DVU2621 0.33 -0.4 2,742,073 - DVU2621 0.39 -0.3 2,742,203 - DVU2621 0.55 -0.1 2,742,348 - DVU2621 0.73 -0.4 2,742,375 - DVU2621 0.76 -0.5 2,742,397 + DVU2621 0.79 +0.1 2,742,452 - DVU2621 0.85 -0.9 2,742,454 + DVU2621 0.86 -1.7 2,742,464 + DVU2621 0.87 -1.8 2,742,467 - DVU2621 0.87 -1.2 2,742,467 - DVU2621 0.87 -1.0
Or see this region's nucleotide sequence