Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2619

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2617 and DVU2619 are separated by 332 nucleotidesDVU2619 and DVU2620 are separated by 100 nucleotides DVU2617: DVU2617 - sodium/calcium exchanger family protein (TIGR), at 2,737,933 to 2,739,153 DVU2617 DVU2619: DVU2619 - conserved hypothetical protein (TIGR), at 2,739,486 to 2,740,214 DVU2619 DVU2620: DVU2620 - conserved hypothetical protein (TIGR), at 2,740,315 to 2,741,475 DVU2620 Position (kb) 2739 2740 2741Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2738.486 kb on - strand, within DVU2617at 2738.563 kb on - strand, within DVU2617at 2738.605 kb on + strand, within DVU2617at 2738.722 kb on - strand, within DVU2617at 2738.751 kb on - strand, within DVU2617at 2738.751 kb on - strand, within DVU2617at 2738.759 kb on + strand, within DVU2617at 2738.899 kb on - strand, within DVU2617at 2739.009 kb on - strand, within DVU2617at 2739.042 kb on - strandat 2739.057 kb on - strandat 2739.073 kb on + strandat 2739.078 kb on - strandat 2739.082 kb on + strandat 2739.091 kb on - strandat 2739.100 kb on + strandat 2739.108 kb on - strandat 2739.166 kb on - strandat 2739.173 kb on - strandat 2739.254 kb on + strandat 2739.328 kb on + strandat 2739.353 kb on - strandat 2739.430 kb on - strandat 2739.465 kb on + strandat 2739.522 kb on - strandat 2739.615 kb on + strand, within DVU2619at 2739.680 kb on - strand, within DVU2619at 2739.776 kb on - strand, within DVU2619at 2739.781 kb on + strand, within DVU2619at 2739.817 kb on - strand, within DVU2619at 2739.819 kb on - strand, within DVU2619at 2739.819 kb on - strand, within DVU2619at 2739.829 kb on + strand, within DVU2619at 2740.048 kb on + strand, within DVU2619at 2740.056 kb on - strand, within DVU2619at 2740.149 kb on - strandat 2740.163 kb on - strandat 2740.164 kb on + strandat 2740.237 kb on + strandat 2740.315 kb on - strandat 2740.352 kb on - strandat 2740.367 kb on - strandat 2740.397 kb on + strandat 2740.397 kb on + strandat 2740.405 kb on - strandat 2740.500 kb on - strand, within DVU2620at 2740.530 kb on - strand, within DVU2620at 2740.539 kb on - strand, within DVU2620at 2740.579 kb on + strand, within DVU2620at 2740.579 kb on + strand, within DVU2620at 2740.581 kb on + strand, within DVU2620at 2740.581 kb on + strand, within DVU2620at 2740.581 kb on + strand, within DVU2620at 2740.589 kb on - strand, within DVU2620at 2740.637 kb on + strand, within DVU2620at 2740.669 kb on + strand, within DVU2620at 2740.670 kb on + strand, within DVU2620at 2740.707 kb on + strand, within DVU2620at 2740.707 kb on + strand, within DVU2620at 2740.806 kb on - strand, within DVU2620at 2740.827 kb on + strand, within DVU2620at 2740.835 kb on - strand, within DVU2620at 2740.858 kb on - strand, within DVU2620at 2740.858 kb on - strand, within DVU2620at 2740.897 kb on + strand, within DVU2620at 2740.905 kb on - strand, within DVU2620at 2740.970 kb on + strand, within DVU2620at 2741.041 kb on + strand, within DVU2620at 2741.090 kb on + strand, within DVU2620at 2741.143 kb on + strand, within DVU2620

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,738,486 - DVU2617 0.45 +0.9
2,738,563 - DVU2617 0.52 +1.5
2,738,605 + DVU2617 0.55 +1.1
2,738,722 - DVU2617 0.65 -1.2
2,738,751 - DVU2617 0.67 -0.2
2,738,751 - DVU2617 0.67 -0.6
2,738,759 + DVU2617 0.68 -2.2
2,738,899 - DVU2617 0.79 -0.7
2,739,009 - DVU2617 0.88 +1.2
2,739,042 - -1.6
2,739,057 - -0.0
2,739,073 + -0.3
2,739,078 - -0.2
2,739,082 + -0.6
2,739,091 - +0.4
2,739,100 + -0.2
2,739,108 - -0.6
2,739,166 - -0.0
2,739,173 - -1.3
2,739,254 + -0.9
2,739,328 + -0.2
2,739,353 - -0.2
2,739,430 - +0.1
2,739,465 + +0.3
2,739,522 - +0.1
2,739,615 + DVU2619 0.18 -0.1
2,739,680 - DVU2619 0.27 -0.3
2,739,776 - DVU2619 0.40 +1.2
2,739,781 + DVU2619 0.40 -0.7
2,739,817 - DVU2619 0.45 +0.1
2,739,819 - DVU2619 0.46 +0.1
2,739,819 - DVU2619 0.46 +0.5
2,739,829 + DVU2619 0.47 +0.5
2,740,048 + DVU2619 0.77 +0.1
2,740,056 - DVU2619 0.78 -0.1
2,740,149 - +0.3
2,740,163 - -0.0
2,740,164 + -0.4
2,740,237 + +0.1
2,740,315 - -0.3
2,740,352 - -0.2
2,740,367 - -0.3
2,740,397 + +0.3
2,740,397 + +0.1
2,740,405 - +1.2
2,740,500 - DVU2620 0.16 +0.6
2,740,530 - DVU2620 0.19 -0.1
2,740,539 - DVU2620 0.19 -0.1
2,740,579 + DVU2620 0.23 -1.0
2,740,579 + DVU2620 0.23 +1.5
2,740,581 + DVU2620 0.23 +0.0
2,740,581 + DVU2620 0.23 -0.4
2,740,581 + DVU2620 0.23 +0.1
2,740,589 - DVU2620 0.24 +0.2
2,740,637 + DVU2620 0.28 +1.2
2,740,669 + DVU2620 0.30 +0.5
2,740,670 + DVU2620 0.31 -1.2
2,740,707 + DVU2620 0.34 -0.7
2,740,707 + DVU2620 0.34 -1.0
2,740,806 - DVU2620 0.42 +0.2
2,740,827 + DVU2620 0.44 -0.3
2,740,835 - DVU2620 0.45 +0.2
2,740,858 - DVU2620 0.47 -0.4
2,740,858 - DVU2620 0.47 +0.2
2,740,897 + DVU2620 0.50 -0.8
2,740,905 - DVU2620 0.51 +0.3
2,740,970 + DVU2620 0.56 +3.0
2,741,041 + DVU2620 0.63 +0.0
2,741,090 + DVU2620 0.67 +0.9
2,741,143 + DVU2620 0.71 -0.4

Or see this region's nucleotide sequence