Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2617 and DVU2619 are separated by 332 nucleotides DVU2619 and DVU2620 are separated by 100 nucleotides
DVU2617: DVU2617 - sodium/calcium exchanger family protein (TIGR), at 2,737,933 to 2,739,153
DVU2617
DVU2619: DVU2619 - conserved hypothetical protein (TIGR), at 2,739,486 to 2,740,214
DVU2619
DVU2620: DVU2620 - conserved hypothetical protein (TIGR), at 2,740,315 to 2,741,475
DVU2620
Position (kb)
2739
2740
2741 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2738.486 kb on - strand, within DVU2617 at 2738.563 kb on - strand, within DVU2617 at 2738.605 kb on + strand, within DVU2617 at 2738.722 kb on - strand, within DVU2617 at 2738.751 kb on - strand, within DVU2617 at 2738.751 kb on - strand, within DVU2617 at 2738.759 kb on + strand, within DVU2617 at 2738.899 kb on - strand, within DVU2617 at 2739.009 kb on - strand, within DVU2617 at 2739.042 kb on - strand at 2739.057 kb on - strand at 2739.073 kb on + strand at 2739.078 kb on - strand at 2739.082 kb on + strand at 2739.091 kb on - strand at 2739.100 kb on + strand at 2739.108 kb on - strand at 2739.166 kb on - strand at 2739.173 kb on - strand at 2739.254 kb on + strand at 2739.328 kb on + strand at 2739.353 kb on - strand at 2739.430 kb on - strand at 2739.465 kb on + strand at 2739.522 kb on - strand at 2739.615 kb on + strand, within DVU2619 at 2739.680 kb on - strand, within DVU2619 at 2739.776 kb on - strand, within DVU2619 at 2739.781 kb on + strand, within DVU2619 at 2739.817 kb on - strand, within DVU2619 at 2739.819 kb on - strand, within DVU2619 at 2739.819 kb on - strand, within DVU2619 at 2739.829 kb on + strand, within DVU2619 at 2740.048 kb on + strand, within DVU2619 at 2740.056 kb on - strand, within DVU2619 at 2740.149 kb on - strand at 2740.163 kb on - strand at 2740.164 kb on + strand at 2740.237 kb on + strand at 2740.315 kb on - strand at 2740.352 kb on - strand at 2740.367 kb on - strand at 2740.397 kb on + strand at 2740.397 kb on + strand at 2740.405 kb on - strand at 2740.500 kb on - strand, within DVU2620 at 2740.530 kb on - strand, within DVU2620 at 2740.539 kb on - strand, within DVU2620 at 2740.579 kb on + strand, within DVU2620 at 2740.579 kb on + strand, within DVU2620 at 2740.581 kb on + strand, within DVU2620 at 2740.581 kb on + strand, within DVU2620 at 2740.581 kb on + strand, within DVU2620 at 2740.589 kb on - strand, within DVU2620 at 2740.637 kb on + strand, within DVU2620 at 2740.669 kb on + strand, within DVU2620 at 2740.670 kb on + strand, within DVU2620 at 2740.707 kb on + strand, within DVU2620 at 2740.707 kb on + strand, within DVU2620 at 2740.806 kb on - strand, within DVU2620 at 2740.827 kb on + strand, within DVU2620 at 2740.835 kb on - strand, within DVU2620 at 2740.858 kb on - strand, within DVU2620 at 2740.858 kb on - strand, within DVU2620 at 2740.897 kb on + strand, within DVU2620 at 2740.905 kb on - strand, within DVU2620 at 2740.970 kb on + strand, within DVU2620 at 2741.041 kb on + strand, within DVU2620 at 2741.090 kb on + strand, within DVU2620 at 2741.143 kb on + strand, within DVU2620
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 2,738,486 - DVU2617 0.45 +0.9 2,738,563 - DVU2617 0.52 +1.5 2,738,605 + DVU2617 0.55 +1.1 2,738,722 - DVU2617 0.65 -1.2 2,738,751 - DVU2617 0.67 -0.2 2,738,751 - DVU2617 0.67 -0.6 2,738,759 + DVU2617 0.68 -2.2 2,738,899 - DVU2617 0.79 -0.7 2,739,009 - DVU2617 0.88 +1.2 2,739,042 - -1.6 2,739,057 - -0.0 2,739,073 + -0.3 2,739,078 - -0.2 2,739,082 + -0.6 2,739,091 - +0.4 2,739,100 + -0.2 2,739,108 - -0.6 2,739,166 - -0.0 2,739,173 - -1.3 2,739,254 + -0.9 2,739,328 + -0.2 2,739,353 - -0.2 2,739,430 - +0.1 2,739,465 + +0.3 2,739,522 - +0.1 2,739,615 + DVU2619 0.18 -0.1 2,739,680 - DVU2619 0.27 -0.3 2,739,776 - DVU2619 0.40 +1.2 2,739,781 + DVU2619 0.40 -0.7 2,739,817 - DVU2619 0.45 +0.1 2,739,819 - DVU2619 0.46 +0.1 2,739,819 - DVU2619 0.46 +0.5 2,739,829 + DVU2619 0.47 +0.5 2,740,048 + DVU2619 0.77 +0.1 2,740,056 - DVU2619 0.78 -0.1 2,740,149 - +0.3 2,740,163 - -0.0 2,740,164 + -0.4 2,740,237 + +0.1 2,740,315 - -0.3 2,740,352 - -0.2 2,740,367 - -0.3 2,740,397 + +0.3 2,740,397 + +0.1 2,740,405 - +1.2 2,740,500 - DVU2620 0.16 +0.6 2,740,530 - DVU2620 0.19 -0.1 2,740,539 - DVU2620 0.19 -0.1 2,740,579 + DVU2620 0.23 -1.0 2,740,579 + DVU2620 0.23 +1.5 2,740,581 + DVU2620 0.23 +0.0 2,740,581 + DVU2620 0.23 -0.4 2,740,581 + DVU2620 0.23 +0.1 2,740,589 - DVU2620 0.24 +0.2 2,740,637 + DVU2620 0.28 +1.2 2,740,669 + DVU2620 0.30 +0.5 2,740,670 + DVU2620 0.31 -1.2 2,740,707 + DVU2620 0.34 -0.7 2,740,707 + DVU2620 0.34 -1.0 2,740,806 - DVU2620 0.42 +0.2 2,740,827 + DVU2620 0.44 -0.3 2,740,835 - DVU2620 0.45 +0.2 2,740,858 - DVU2620 0.47 -0.4 2,740,858 - DVU2620 0.47 +0.2 2,740,897 + DVU2620 0.50 -0.8 2,740,905 - DVU2620 0.51 +0.3 2,740,970 + DVU2620 0.56 +3.0 2,741,041 + DVU2620 0.63 +0.0 2,741,090 + DVU2620 0.67 +0.9 2,741,143 + DVU2620 0.71 -0.4
Or see this region's nucleotide sequence