Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2577 and tRNA-Leu are separated by 131 nucleotides tRNA-Leu and DVU2578 are separated by 108 nucleotides DVU2578 and rrf are separated by 646 nucleotides rrf and rrl are separated by 107 nucleotides
DVU2577: DVU2577 - DNA-binding response regulator, LuxR family (TIGR), at 2,690,356 to 2,691,006
DVU2577
DVU_tRNA-Leu-6: tRNA-Leu - tRNA with anticodon CAG for Leu (VIMSS-AUTO), at 2,691,138 to 2,691,224
tRNA-Leu
DVU2578: DVU2578 - response regulator (TIGR), at 2,691,333 to 2,692,022
DVU2578
Dv5SD: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 2,692,669 to 2,692,785
rrf
Dv23SD: rrl - 23S ribosomal RNA (VIMSS-AUTO), at 2,692,893 to 2,695,813
rrl
Position (kb)
2691
2692
2693 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2690.343 kb on - strand at 2690.358 kb on + strand at 2690.414 kb on - strand at 2690.418 kb on + strand at 2690.455 kb on + strand, within DVU2577 at 2690.520 kb on + strand, within DVU2577 at 2690.535 kb on - strand, within DVU2577 at 2690.648 kb on + strand, within DVU2577 at 2690.650 kb on - strand, within DVU2577 at 2690.699 kb on - strand, within DVU2577 at 2690.921 kb on - strand, within DVU2577 at 2691.032 kb on + strand at 2691.244 kb on - strand at 2691.297 kb on - strand at 2691.509 kb on + strand, within DVU2578 at 2691.560 kb on - strand, within DVU2578 at 2691.596 kb on - strand, within DVU2578 at 2691.684 kb on - strand, within DVU2578 at 2691.707 kb on + strand, within DVU2578 at 2691.715 kb on - strand, within DVU2578 at 2691.734 kb on - strand, within DVU2578 at 2691.758 kb on + strand, within DVU2578 at 2691.792 kb on - strand, within DVU2578 at 2691.802 kb on + strand, within DVU2578 at 2692.073 kb on + strand at 2692.073 kb on + strand at 2692.073 kb on + strand at 2692.081 kb on - strand at 2692.170 kb on + strand at 2692.362 kb on + strand at 2692.415 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 2,690,343 - +1.7 2,690,358 + +0.8 2,690,414 - +0.3 2,690,418 + +0.0 2,690,455 + DVU2577 0.15 +0.5 2,690,520 + DVU2577 0.25 -1.1 2,690,535 - DVU2577 0.27 -0.0 2,690,648 + DVU2577 0.45 -1.3 2,690,650 - DVU2577 0.45 -0.9 2,690,699 - DVU2577 0.53 +0.3 2,690,921 - DVU2577 0.87 -1.0 2,691,032 + -1.4 2,691,244 - +0.6 2,691,297 - -1.1 2,691,509 + DVU2578 0.26 +0.1 2,691,560 - DVU2578 0.33 +0.1 2,691,596 - DVU2578 0.38 +0.1 2,691,684 - DVU2578 0.51 -0.0 2,691,707 + DVU2578 0.54 -0.1 2,691,715 - DVU2578 0.55 -0.3 2,691,734 - DVU2578 0.58 +0.3 2,691,758 + DVU2578 0.62 +0.2 2,691,792 - DVU2578 0.67 +0.1 2,691,802 + DVU2578 0.68 +0.3 2,692,073 + -0.3 2,692,073 + -0.1 2,692,073 + +2.5 2,692,081 - -0.3 2,692,170 + -0.2 2,692,362 + -0.4 2,692,415 - -1.9
Or see this region's nucleotide sequence