Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2555 and DVU2556 are separated by 146 nucleotides DVU2556 and birA are separated by 287 nucleotides
DVU2555: DVU2555 - MATE efflux family protein (TIGR), at 2,666,443 to 2,667,864
DVU2555
DVU2556: DVU2556 - hypothetical protein (TIGR), at 2,668,011 to 2,668,379
DVU2556
DVU2557: birA - birA bifunctional protein (TIGR), at 2,668,667 to 2,669,659
birA
Position (kb)
2668
2669 Strain fitness (log2 ratio)
-1
0
1 at 2667.038 kb on - strand, within DVU2555 at 2667.079 kb on - strand, within DVU2555 at 2667.096 kb on - strand, within DVU2555 at 2667.353 kb on + strand, within DVU2555 at 2667.556 kb on - strand, within DVU2555 at 2667.630 kb on - strand, within DVU2555 at 2667.691 kb on - strand, within DVU2555 at 2667.720 kb on + strand, within DVU2555 at 2667.872 kb on - strand at 2667.893 kb on - strand at 2668.061 kb on - strand, within DVU2556 at 2668.120 kb on + strand, within DVU2556 at 2668.125 kb on + strand, within DVU2556 at 2668.185 kb on - strand, within DVU2556 at 2668.209 kb on + strand, within DVU2556 at 2668.253 kb on - strand, within DVU2556 at 2668.339 kb on - strand, within DVU2556 at 2668.420 kb on - strand at 2668.496 kb on - strand at 2668.501 kb on - strand at 2668.545 kb on - strand at 2668.603 kb on - strand at 2668.629 kb on + strand at 2668.631 kb on - strand at 2668.638 kb on - strand at 2668.701 kb on + strand at 2668.777 kb on - strand, within birA at 2668.871 kb on - strand, within birA at 2669.051 kb on + strand, within birA at 2669.094 kb on + strand, within birA at 2669.123 kb on - strand, within birA at 2669.172 kb on + strand, within birA at 2669.268 kb on - strand, within birA at 2669.270 kb on + strand, within birA
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 2,667,038 - DVU2555 0.42 +0.3 2,667,079 - DVU2555 0.45 -0.3 2,667,096 - DVU2555 0.46 -0.4 2,667,353 + DVU2555 0.64 +0.3 2,667,556 - DVU2555 0.78 -0.2 2,667,630 - DVU2555 0.83 +0.0 2,667,691 - DVU2555 0.88 -0.2 2,667,720 + DVU2555 0.90 +1.3 2,667,872 - -0.4 2,667,893 - +0.1 2,668,061 - DVU2556 0.14 +1.5 2,668,120 + DVU2556 0.30 +1.3 2,668,125 + DVU2556 0.31 -0.2 2,668,185 - DVU2556 0.47 +0.4 2,668,209 + DVU2556 0.54 +0.4 2,668,253 - DVU2556 0.66 -0.2 2,668,339 - DVU2556 0.89 -0.1 2,668,420 - -0.4 2,668,496 - -0.3 2,668,501 - +1.0 2,668,545 - -0.9 2,668,603 - +0.2 2,668,629 + -0.2 2,668,631 - -1.3 2,668,638 - -0.1 2,668,701 + -0.5 2,668,777 - birA DVU2557 0.11 -0.1 2,668,871 - birA DVU2557 0.21 -1.1 2,669,051 + birA DVU2557 0.39 -1.1 2,669,094 + birA DVU2557 0.43 -0.5 2,669,123 - birA DVU2557 0.46 -0.8 2,669,172 + birA DVU2557 0.51 -0.1 2,669,268 - birA DVU2557 0.61 +0.5 2,669,270 + birA DVU2557 0.61 -0.1
Or see this region's nucleotide sequence