Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2556

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2555 and DVU2556 are separated by 146 nucleotidesDVU2556 and birA are separated by 287 nucleotides DVU2555: DVU2555 - MATE efflux family protein (TIGR), at 2,666,443 to 2,667,864 DVU2555 DVU2556: DVU2556 - hypothetical protein (TIGR), at 2,668,011 to 2,668,379 DVU2556 DVU2557: birA - birA bifunctional protein (TIGR), at 2,668,667 to 2,669,659 birA Position (kb) 2668 2669Strain fitness (log2 ratio) -1 0 1at 2667.038 kb on - strand, within DVU2555at 2667.079 kb on - strand, within DVU2555at 2667.096 kb on - strand, within DVU2555at 2667.353 kb on + strand, within DVU2555at 2667.556 kb on - strand, within DVU2555at 2667.630 kb on - strand, within DVU2555at 2667.691 kb on - strand, within DVU2555at 2667.720 kb on + strand, within DVU2555at 2667.872 kb on - strandat 2667.893 kb on - strandat 2668.061 kb on - strand, within DVU2556at 2668.120 kb on + strand, within DVU2556at 2668.125 kb on + strand, within DVU2556at 2668.185 kb on - strand, within DVU2556at 2668.209 kb on + strand, within DVU2556at 2668.253 kb on - strand, within DVU2556at 2668.339 kb on - strand, within DVU2556at 2668.420 kb on - strandat 2668.496 kb on - strandat 2668.501 kb on - strandat 2668.545 kb on - strandat 2668.603 kb on - strandat 2668.629 kb on + strandat 2668.631 kb on - strandat 2668.638 kb on - strandat 2668.701 kb on + strandat 2668.777 kb on - strand, within birAat 2668.871 kb on - strand, within birAat 2669.051 kb on + strand, within birAat 2669.094 kb on + strand, within birAat 2669.123 kb on - strand, within birAat 2669.172 kb on + strand, within birAat 2669.268 kb on - strand, within birAat 2669.270 kb on + strand, within birA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,667,038 - DVU2555 0.42 +0.3
2,667,079 - DVU2555 0.45 -0.3
2,667,096 - DVU2555 0.46 -0.4
2,667,353 + DVU2555 0.64 +0.3
2,667,556 - DVU2555 0.78 -0.2
2,667,630 - DVU2555 0.83 +0.0
2,667,691 - DVU2555 0.88 -0.2
2,667,720 + DVU2555 0.90 +1.3
2,667,872 - -0.4
2,667,893 - +0.1
2,668,061 - DVU2556 0.14 +1.5
2,668,120 + DVU2556 0.30 +1.3
2,668,125 + DVU2556 0.31 -0.2
2,668,185 - DVU2556 0.47 +0.4
2,668,209 + DVU2556 0.54 +0.4
2,668,253 - DVU2556 0.66 -0.2
2,668,339 - DVU2556 0.89 -0.1
2,668,420 - -0.4
2,668,496 - -0.3
2,668,501 - +1.0
2,668,545 - -0.9
2,668,603 - +0.2
2,668,629 + -0.2
2,668,631 - -1.3
2,668,638 - -0.1
2,668,701 + -0.5
2,668,777 - birA DVU2557 0.11 -0.1
2,668,871 - birA DVU2557 0.21 -1.1
2,669,051 + birA DVU2557 0.39 -1.1
2,669,094 + birA DVU2557 0.43 -0.5
2,669,123 - birA DVU2557 0.46 -0.8
2,669,172 + birA DVU2557 0.51 -0.1
2,669,268 - birA DVU2557 0.61 +0.5
2,669,270 + birA DVU2557 0.61 -0.1

Or see this region's nucleotide sequence