Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2510

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurE and DVU2510 overlap by 4 nucleotidesDVU2510 and DVU2511 are separated by 14 nucleotidesDVU2511 and mraW are separated by 2 nucleotides DVU2509: murE - UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (TIGR), at 2,621,697 to 2,623,157 murE DVU2510: DVU2510 - penicillin-binding protein (TIGR), at 2,623,154 to 2,625,226 DVU2510 DVU2511: DVU2511 - hypothetical protein (TIGR), at 2,625,241 to 2,625,528 DVU2511 DVU2512: mraW - S-adenosyl-methyltransferase MraW (TIGR), at 2,625,531 to 2,626,502 mraW Position (kb) 2623 2624 2625 2626Strain fitness (log2 ratio) -1 0 1at 2623.243 kb on - strandat 2623.406 kb on - strand, within DVU2510at 2625.134 kb on - strandat 2625.228 kb on + strandat 2625.528 kb on + strandat 2625.536 kb on - strandat 2625.536 kb on - strandat 2625.536 kb on - strandat 2626.001 kb on - strand, within mraWat 2626.211 kb on - strand, within mraWat 2626.215 kb on - strand, within mraW

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,623,243 - +0.4
2,623,406 - DVU2510 0.12 +0.7
2,625,134 - +0.8
2,625,228 + +0.2
2,625,528 + +0.9
2,625,536 - +0.3
2,625,536 - +0.0
2,625,536 - -1.0
2,626,001 - mraW DVU2512 0.48 -0.4
2,626,211 - mraW DVU2512 0.70 -0.3
2,626,215 - mraW DVU2512 0.70 +0.1

Or see this region's nucleotide sequence