Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2418

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2416 and DVU2417 overlap by 4 nucleotidesDVU2417 and DVU2418 are separated by 435 nucleotidesDVU2418 and DVU2419 are separated by 357 nucleotides DVU2416: DVU2416 - conserved hypothetical protein (TIGR), at 2,524,701 to 2,525,183 DVU2416 DVU2417: DVU2417 - SlyX protein (TIGR), at 2,525,180 to 2,525,401 DVU2417 DVU2418: DVU2418 - vanZ-like family protein (TIGR), at 2,525,837 to 2,526,259 DVU2418 DVU2419: DVU2419 - conserved domain protein (TIGR), at 2,526,617 to 2,527,171 DVU2419 Position (kb) 2525 2526 2527Strain fitness (log2 ratio) -2 -1 0 1 2at 2524.837 kb on - strand, within DVU2416at 2524.837 kb on - strand, within DVU2416at 2524.957 kb on - strand, within DVU2416at 2524.960 kb on + strand, within DVU2416at 2524.985 kb on + strand, within DVU2416at 2525.007 kb on + strand, within DVU2416at 2525.033 kb on - strand, within DVU2416at 2525.033 kb on - strand, within DVU2416at 2525.033 kb on - strand, within DVU2416at 2525.076 kb on - strand, within DVU2416at 2525.263 kb on + strand, within DVU2417at 2525.332 kb on + strand, within DVU2417at 2525.345 kb on - strand, within DVU2417at 2525.539 kb on + strandat 2525.566 kb on + strandat 2525.570 kb on + strandat 2525.573 kb on - strandat 2525.589 kb on + strandat 2525.621 kb on + strandat 2525.621 kb on + strandat 2525.623 kb on + strandat 2525.633 kb on + strandat 2525.695 kb on + strandat 2525.804 kb on - strandat 2525.816 kb on + strandat 2525.896 kb on - strand, within DVU2418at 2525.912 kb on + strand, within DVU2418at 2526.122 kb on - strand, within DVU2418at 2526.124 kb on + strand, within DVU2418at 2526.201 kb on - strand, within DVU2418at 2526.228 kb on + strandat 2526.390 kb on + strandat 2526.390 kb on + strandat 2526.390 kb on + strandat 2526.390 kb on + strandat 2526.390 kb on + strandat 2526.398 kb on - strandat 2526.398 kb on - strandat 2526.410 kb on + strandat 2526.440 kb on - strandat 2526.567 kb on + strandat 2526.614 kb on + strandat 2526.621 kb on - strandat 2526.622 kb on - strandat 2526.624 kb on + strandat 2526.642 kb on + strandat 2526.690 kb on + strand, within DVU2419at 2526.695 kb on - strand, within DVU2419at 2526.759 kb on - strand, within DVU2419at 2526.813 kb on - strand, within DVU2419at 2526.826 kb on + strand, within DVU2419at 2526.826 kb on + strand, within DVU2419at 2526.842 kb on + strand, within DVU2419at 2526.914 kb on + strand, within DVU2419at 2526.960 kb on - strand, within DVU2419at 2526.977 kb on - strand, within DVU2419at 2527.194 kb on + strandat 2527.227 kb on + strandat 2527.254 kb on - strandat 2527.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,524,837 - DVU2416 0.28 -0.7
2,524,837 - DVU2416 0.28 -0.8
2,524,957 - DVU2416 0.53 +0.6
2,524,960 + DVU2416 0.54 +0.2
2,524,985 + DVU2416 0.59 -0.2
2,525,007 + DVU2416 0.63 +0.2
2,525,033 - DVU2416 0.69 -0.2
2,525,033 - DVU2416 0.69 -0.4
2,525,033 - DVU2416 0.69 -2.4
2,525,076 - DVU2416 0.78 +0.6
2,525,263 + DVU2417 0.37 -0.6
2,525,332 + DVU2417 0.68 +0.2
2,525,345 - DVU2417 0.74 +0.2
2,525,539 + -0.8
2,525,566 + -0.7
2,525,570 + +0.7
2,525,573 - +0.7
2,525,589 + -0.4
2,525,621 + +0.9
2,525,621 + -1.3
2,525,623 + -0.1
2,525,633 + -1.5
2,525,695 + +2.5
2,525,804 - -0.0
2,525,816 + -1.0
2,525,896 - DVU2418 0.14 +0.1
2,525,912 + DVU2418 0.18 -0.0
2,526,122 - DVU2418 0.67 +1.0
2,526,124 + DVU2418 0.68 +0.0
2,526,201 - DVU2418 0.86 -0.2
2,526,228 + +1.9
2,526,390 + -1.1
2,526,390 + -0.1
2,526,390 + -0.1
2,526,390 + +1.1
2,526,390 + -1.3
2,526,398 - +0.0
2,526,398 - +0.2
2,526,410 + +0.2
2,526,440 - +0.1
2,526,567 + +0.4
2,526,614 + -0.8
2,526,621 - +0.5
2,526,622 - -0.1
2,526,624 + -0.3
2,526,642 + -0.2
2,526,690 + DVU2419 0.13 +0.2
2,526,695 - DVU2419 0.14 -0.8
2,526,759 - DVU2419 0.26 -1.2
2,526,813 - DVU2419 0.35 -0.1
2,526,826 + DVU2419 0.38 -0.1
2,526,826 + DVU2419 0.38 -0.2
2,526,842 + DVU2419 0.41 -0.6
2,526,914 + DVU2419 0.54 -0.3
2,526,960 - DVU2419 0.62 +0.1
2,526,977 - DVU2419 0.65 -0.0
2,527,194 + -0.2
2,527,227 + -0.0
2,527,254 - -0.3
2,527,254 - -0.1

Or see this region's nucleotide sequence