Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2160

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2158 and DVU2159 are separated by 8 nucleotidesDVU2159 and DVU2160 are separated by 17 nucleotidesDVU2160 and DVU2161 overlap by 4 nucleotidesDVU2161 and DVU2162 overlap by 1 nucleotides DVU2158: DVU2158 - hypothetical protein (TIGR), at 2,260,761 to 2,261,111 DVU2158 DVU2159: DVU2159 - hypothetical protein (TIGR), at 2,261,120 to 2,262,064 DVU2159 DVU2160: DVU2160 - hypothetical protein (TIGR), at 2,262,082 to 2,262,549 DVU2160 DVU2161: DVU2161 - hypothetical protein (TIGR), at 2,262,546 to 2,263,256 DVU2161 DVU2162: DVU2162 - hypothetical protein (TIGR), at 2,263,256 to 2,263,585 DVU2162 Position (kb) 2262 2263Strain fitness (log2 ratio) -2 -1 0 1at 2261.136 kb on + strandat 2261.144 kb on - strandat 2261.166 kb on - strandat 2261.234 kb on + strand, within DVU2159at 2261.238 kb on + strand, within DVU2159at 2261.308 kb on + strand, within DVU2159at 2261.308 kb on + strand, within DVU2159at 2261.316 kb on - strand, within DVU2159at 2261.316 kb on - strand, within DVU2159at 2261.316 kb on - strand, within DVU2159at 2261.342 kb on + strand, within DVU2159at 2261.371 kb on - strand, within DVU2159at 2261.434 kb on - strand, within DVU2159at 2261.483 kb on + strand, within DVU2159at 2261.496 kb on + strand, within DVU2159at 2261.581 kb on + strand, within DVU2159at 2261.589 kb on + strand, within DVU2159at 2261.627 kb on + strand, within DVU2159at 2261.755 kb on + strand, within DVU2159at 2261.755 kb on + strand, within DVU2159at 2261.755 kb on + strand, within DVU2159at 2261.763 kb on - strand, within DVU2159at 2261.789 kb on + strand, within DVU2159at 2261.797 kb on - strand, within DVU2159at 2261.797 kb on - strand, within DVU2159at 2261.820 kb on + strand, within DVU2159at 2261.826 kb on + strand, within DVU2159at 2261.826 kb on + strand, within DVU2159at 2261.826 kb on + strand, within DVU2159at 2261.895 kb on + strand, within DVU2159at 2261.907 kb on + strand, within DVU2159at 2261.930 kb on - strand, within DVU2159at 2262.045 kb on + strandat 2262.045 kb on + strandat 2262.053 kb on - strandat 2262.131 kb on + strand, within DVU2160at 2262.174 kb on - strand, within DVU2160at 2262.195 kb on - strand, within DVU2160at 2262.209 kb on - strand, within DVU2160at 2262.292 kb on + strand, within DVU2160at 2262.394 kb on + strand, within DVU2160at 2262.394 kb on + strand, within DVU2160at 2262.407 kb on + strand, within DVU2160at 2262.463 kb on + strand, within DVU2160at 2262.524 kb on - strandat 2262.524 kb on - strandat 2262.606 kb on + strandat 2262.699 kb on + strand, within DVU2161at 2262.742 kb on + strand, within DVU2161at 2262.742 kb on + strand, within DVU2161at 2262.770 kb on + strand, within DVU2161at 2262.778 kb on - strand, within DVU2161at 2262.859 kb on + strand, within DVU2161at 2262.883 kb on + strand, within DVU2161at 2262.936 kb on - strand, within DVU2161at 2262.988 kb on - strand, within DVU2161at 2263.027 kb on + strand, within DVU2161at 2263.155 kb on - strand, within DVU2161at 2263.233 kb on - strandat 2263.234 kb on + strandat 2263.262 kb on - strandat 2263.268 kb on + strandat 2263.295 kb on - strand, within DVU2162at 2263.474 kb on + strand, within DVU2162at 2263.482 kb on - strand, within DVU2162at 2263.494 kb on + strand, within DVU2162at 2263.507 kb on - strand, within DVU2162at 2263.507 kb on - strand, within DVU2162at 2263.522 kb on - strand, within DVU2162

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,261,136 + +0.2
2,261,144 - -0.6
2,261,166 - -0.1
2,261,234 + DVU2159 0.12 +0.4
2,261,238 + DVU2159 0.12 -0.0
2,261,308 + DVU2159 0.20 -0.8
2,261,308 + DVU2159 0.20 +0.0
2,261,316 - DVU2159 0.21 +0.9
2,261,316 - DVU2159 0.21 +0.3
2,261,316 - DVU2159 0.21 -0.2
2,261,342 + DVU2159 0.23 -0.3
2,261,371 - DVU2159 0.27 +0.4
2,261,434 - DVU2159 0.33 +0.7
2,261,483 + DVU2159 0.38 +0.2
2,261,496 + DVU2159 0.40 -0.1
2,261,581 + DVU2159 0.49 -0.8
2,261,589 + DVU2159 0.50 -0.0
2,261,627 + DVU2159 0.54 +0.8
2,261,755 + DVU2159 0.67 +0.1
2,261,755 + DVU2159 0.67 +0.1
2,261,755 + DVU2159 0.67 +0.6
2,261,763 - DVU2159 0.68 +0.2
2,261,789 + DVU2159 0.71 -0.7
2,261,797 - DVU2159 0.72 +0.3
2,261,797 - DVU2159 0.72 -0.4
2,261,820 + DVU2159 0.74 +0.8
2,261,826 + DVU2159 0.75 -0.3
2,261,826 + DVU2159 0.75 +0.3
2,261,826 + DVU2159 0.75 +0.1
2,261,895 + DVU2159 0.82 +0.4
2,261,907 + DVU2159 0.83 -0.3
2,261,930 - DVU2159 0.86 +1.6
2,262,045 + +0.1
2,262,045 + +0.1
2,262,053 - -0.0
2,262,131 + DVU2160 0.10 +0.1
2,262,174 - DVU2160 0.20 +0.6
2,262,195 - DVU2160 0.24 +0.2
2,262,209 - DVU2160 0.27 -0.6
2,262,292 + DVU2160 0.45 -0.0
2,262,394 + DVU2160 0.67 +0.4
2,262,394 + DVU2160 0.67 +0.2
2,262,407 + DVU2160 0.69 +0.0
2,262,463 + DVU2160 0.81 +0.4
2,262,524 - +0.4
2,262,524 - +0.0
2,262,606 + -1.3
2,262,699 + DVU2161 0.22 -1.0
2,262,742 + DVU2161 0.28 +0.0
2,262,742 + DVU2161 0.28 +0.3
2,262,770 + DVU2161 0.32 -0.1
2,262,778 - DVU2161 0.33 +0.6
2,262,859 + DVU2161 0.44 +0.1
2,262,883 + DVU2161 0.47 -0.3
2,262,936 - DVU2161 0.55 +1.0
2,262,988 - DVU2161 0.62 -1.3
2,263,027 + DVU2161 0.68 -0.1
2,263,155 - DVU2161 0.86 -2.0
2,263,233 - +0.1
2,263,234 + +0.1
2,263,262 - -0.6
2,263,268 + -0.7
2,263,295 - DVU2162 0.12 -0.2
2,263,474 + DVU2162 0.66 -0.6
2,263,482 - DVU2162 0.68 -0.1
2,263,494 + DVU2162 0.72 -0.1
2,263,507 - DVU2162 0.76 -0.9
2,263,507 - DVU2162 0.76 -0.3
2,263,522 - DVU2162 0.81 +0.4

Or see this region's nucleotide sequence