Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2112

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2111 and DVU2112 overlap by 4 nucleotidesDVU2112 and DVU2113 are separated by 311 nucleotides DVU2111: DVU2111 - transcriptional regulator, LysR family (TIGR), at 2,206,454 to 2,207,356 DVU2111 DVU2112: DVU2112 - hypothetical protein (TIGR), at 2,207,353 to 2,207,772 DVU2112 DVU2113: DVU2113 - xanthine/uracil permease family protein (TIGR), at 2,208,084 to 2,209,415 DVU2113 Position (kb) 2207 2208Strain fitness (log2 ratio) -1 0 1 2 3at 2206.398 kb on + strandat 2206.476 kb on - strandat 2206.557 kb on - strand, within DVU2111at 2206.698 kb on + strand, within DVU2111at 2206.739 kb on - strand, within DVU2111at 2206.742 kb on - strand, within DVU2111at 2206.785 kb on + strand, within DVU2111at 2206.808 kb on - strand, within DVU2111at 2206.917 kb on - strand, within DVU2111at 2206.917 kb on - strand, within DVU2111at 2206.932 kb on - strand, within DVU2111at 2206.937 kb on + strand, within DVU2111at 2206.989 kb on - strand, within DVU2111at 2207.082 kb on + strand, within DVU2111at 2207.092 kb on + strand, within DVU2111at 2207.101 kb on + strand, within DVU2111at 2207.155 kb on - strand, within DVU2111at 2207.155 kb on - strand, within DVU2111at 2207.155 kb on - strand, within DVU2111at 2207.300 kb on - strandat 2207.368 kb on - strandat 2207.453 kb on - strand, within DVU2112at 2207.567 kb on + strand, within DVU2112at 2207.672 kb on - strand, within DVU2112at 2207.710 kb on - strand, within DVU2112at 2207.710 kb on - strand, within DVU2112at 2207.736 kb on - strandat 2207.791 kb on - strandat 2207.826 kb on + strandat 2207.946 kb on - strandat 2207.946 kb on - strandat 2207.946 kb on - strandat 2207.946 kb on - strandat 2208.011 kb on + strandat 2208.054 kb on - strandat 2208.170 kb on - strandat 2208.249 kb on + strand, within DVU2113at 2208.325 kb on + strand, within DVU2113at 2208.359 kb on + strand, within DVU2113at 2208.463 kb on - strand, within DVU2113at 2208.536 kb on - strand, within DVU2113at 2208.603 kb on - strand, within DVU2113at 2208.712 kb on + strand, within DVU2113at 2208.730 kb on - strand, within DVU2113

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,206,398 + -0.1
2,206,476 - -1.2
2,206,557 - DVU2111 0.11 -1.2
2,206,698 + DVU2111 0.27 -0.9
2,206,739 - DVU2111 0.32 -0.0
2,206,742 - DVU2111 0.32 -0.0
2,206,785 + DVU2111 0.37 +0.3
2,206,808 - DVU2111 0.39 -0.4
2,206,917 - DVU2111 0.51 +0.2
2,206,917 - DVU2111 0.51 -1.0
2,206,932 - DVU2111 0.53 +0.1
2,206,937 + DVU2111 0.53 +0.3
2,206,989 - DVU2111 0.59 -1.4
2,207,082 + DVU2111 0.70 -0.2
2,207,092 + DVU2111 0.71 +0.0
2,207,101 + DVU2111 0.72 -0.1
2,207,155 - DVU2111 0.78 +0.5
2,207,155 - DVU2111 0.78 -0.0
2,207,155 - DVU2111 0.78 +0.3
2,207,300 - +0.1
2,207,368 - +0.7
2,207,453 - DVU2112 0.24 -0.1
2,207,567 + DVU2112 0.51 -0.0
2,207,672 - DVU2112 0.76 +0.3
2,207,710 - DVU2112 0.85 +0.9
2,207,710 - DVU2112 0.85 -0.3
2,207,736 - -0.0
2,207,791 - -1.1
2,207,826 + +1.0
2,207,946 - -1.1
2,207,946 - -0.1
2,207,946 - +0.3
2,207,946 - -1.0
2,208,011 + +0.0
2,208,054 - -0.6
2,208,170 - +1.4
2,208,249 + DVU2113 0.12 +0.1
2,208,325 + DVU2113 0.18 +1.6
2,208,359 + DVU2113 0.21 +0.6
2,208,463 - DVU2113 0.28 +0.6
2,208,536 - DVU2113 0.34 -1.7
2,208,603 - DVU2113 0.39 +0.1
2,208,712 + DVU2113 0.47 +3.3
2,208,730 - DVU2113 0.48 +0.1

Or see this region's nucleotide sequence