Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2111 and DVU2112 overlap by 4 nucleotides DVU2112 and DVU2113 are separated by 311 nucleotides
DVU2111: DVU2111 - transcriptional regulator, LysR family (TIGR), at 2,206,454 to 2,207,356
DVU2111
DVU2112: DVU2112 - hypothetical protein (TIGR), at 2,207,353 to 2,207,772
DVU2112
DVU2113: DVU2113 - xanthine/uracil permease family protein (TIGR), at 2,208,084 to 2,209,415
DVU2113
Position (kb)
2207
2208 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2206.398 kb on + strand at 2206.476 kb on - strand at 2206.557 kb on - strand, within DVU2111 at 2206.698 kb on + strand, within DVU2111 at 2206.739 kb on - strand, within DVU2111 at 2206.742 kb on - strand, within DVU2111 at 2206.785 kb on + strand, within DVU2111 at 2206.808 kb on - strand, within DVU2111 at 2206.917 kb on - strand, within DVU2111 at 2206.917 kb on - strand, within DVU2111 at 2206.932 kb on - strand, within DVU2111 at 2206.937 kb on + strand, within DVU2111 at 2206.989 kb on - strand, within DVU2111 at 2207.082 kb on + strand, within DVU2111 at 2207.092 kb on + strand, within DVU2111 at 2207.101 kb on + strand, within DVU2111 at 2207.155 kb on - strand, within DVU2111 at 2207.155 kb on - strand, within DVU2111 at 2207.155 kb on - strand, within DVU2111 at 2207.300 kb on - strand at 2207.368 kb on - strand at 2207.453 kb on - strand, within DVU2112 at 2207.567 kb on + strand, within DVU2112 at 2207.672 kb on - strand, within DVU2112 at 2207.710 kb on - strand, within DVU2112 at 2207.710 kb on - strand, within DVU2112 at 2207.736 kb on - strand at 2207.791 kb on - strand at 2207.826 kb on + strand at 2207.946 kb on - strand at 2207.946 kb on - strand at 2207.946 kb on - strand at 2207.946 kb on - strand at 2208.011 kb on + strand at 2208.054 kb on - strand at 2208.170 kb on - strand at 2208.249 kb on + strand, within DVU2113 at 2208.325 kb on + strand, within DVU2113 at 2208.359 kb on + strand, within DVU2113 at 2208.463 kb on - strand, within DVU2113 at 2208.536 kb on - strand, within DVU2113 at 2208.603 kb on - strand, within DVU2113 at 2208.712 kb on + strand, within DVU2113 at 2208.730 kb on - strand, within DVU2113
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 2,206,398 + -0.1 2,206,476 - -1.2 2,206,557 - DVU2111 0.11 -1.2 2,206,698 + DVU2111 0.27 -0.9 2,206,739 - DVU2111 0.32 -0.0 2,206,742 - DVU2111 0.32 -0.0 2,206,785 + DVU2111 0.37 +0.3 2,206,808 - DVU2111 0.39 -0.4 2,206,917 - DVU2111 0.51 +0.2 2,206,917 - DVU2111 0.51 -1.0 2,206,932 - DVU2111 0.53 +0.1 2,206,937 + DVU2111 0.53 +0.3 2,206,989 - DVU2111 0.59 -1.4 2,207,082 + DVU2111 0.70 -0.2 2,207,092 + DVU2111 0.71 +0.0 2,207,101 + DVU2111 0.72 -0.1 2,207,155 - DVU2111 0.78 +0.5 2,207,155 - DVU2111 0.78 -0.0 2,207,155 - DVU2111 0.78 +0.3 2,207,300 - +0.1 2,207,368 - +0.7 2,207,453 - DVU2112 0.24 -0.1 2,207,567 + DVU2112 0.51 -0.0 2,207,672 - DVU2112 0.76 +0.3 2,207,710 - DVU2112 0.85 +0.9 2,207,710 - DVU2112 0.85 -0.3 2,207,736 - -0.0 2,207,791 - -1.1 2,207,826 + +1.0 2,207,946 - -1.1 2,207,946 - -0.1 2,207,946 - +0.3 2,207,946 - -1.0 2,208,011 + +0.0 2,208,054 - -0.6 2,208,170 - +1.4 2,208,249 + DVU2113 0.12 +0.1 2,208,325 + DVU2113 0.18 +1.6 2,208,359 + DVU2113 0.21 +0.6 2,208,463 - DVU2113 0.28 +0.6 2,208,536 - DVU2113 0.34 -1.7 2,208,603 - DVU2113 0.39 +0.1 2,208,712 + DVU2113 0.47 +3.3 2,208,730 - DVU2113 0.48 +0.1
Or see this region's nucleotide sequence