Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1724

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1721 and DVU1722 are separated by 0 nucleotidesDVU1722 and DVU1723 are separated by 254 nucleotidesDVU1723 and DVU1724 overlap by 4 nucleotidesDVU1724 and DVU1725 overlap by 14 nucleotidesDVU1725 and DVU1726 are separated by 135 nucleotidesDVU1726 and DVU1727 overlap by 4 nucleotides DVU1721: DVU1721 - hypothetical protein (TIGR), at 1,794,775 to 1,796,427 DVU1721 DVU1722: DVU1722 - hypothetical protein (TIGR), at 1,796,428 to 1,796,523 DVU1722 DVU1723: DVU1723 - hypothetical protein (TIGR), at 1,796,778 to 1,797,332 DVU1723 DVU1724: DVU1724 - phage uncharacterized protein, putative (TIGR), at 1,797,329 to 1,798,933 DVU1724 DVU1725: DVU1725 - conserved hypothetical protein (TIGR), at 1,798,920 to 1,799,528 DVU1725 DVU1726: DVU1726 - hypothetical protein (TIGR), at 1,799,664 to 1,799,912 DVU1726 DVU1727: DVU1727 - hypothetical protein (TIGR), at 1,799,909 to 1,800,259 DVU1727 Position (kb) 1797 1798 1799Strain fitness (log2 ratio) -1 0 1 2at 1796.388 kb on - strandat 1796.405 kb on + strandat 1796.410 kb on + strandat 1796.497 kb on + strand, within DVU1722at 1796.505 kb on - strand, within DVU1722at 1796.510 kb on - strand, within DVU1722at 1796.545 kb on - strandat 1796.721 kb on + strandat 1796.793 kb on - strandat 1796.793 kb on - strandat 1796.795 kb on + strandat 1796.863 kb on - strand, within DVU1723at 1796.879 kb on - strand, within DVU1723at 1796.901 kb on + strand, within DVU1723at 1796.901 kb on + strand, within DVU1723at 1796.909 kb on - strand, within DVU1723at 1796.909 kb on - strand, within DVU1723at 1796.909 kb on - strand, within DVU1723at 1796.916 kb on + strand, within DVU1723at 1796.924 kb on - strand, within DVU1723at 1796.926 kb on + strand, within DVU1723at 1797.023 kb on - strand, within DVU1723at 1797.105 kb on + strand, within DVU1723at 1797.153 kb on + strand, within DVU1723at 1797.200 kb on - strand, within DVU1723at 1797.225 kb on + strand, within DVU1723at 1797.232 kb on + strand, within DVU1723at 1797.233 kb on - strand, within DVU1723at 1797.453 kb on - strandat 1797.562 kb on + strand, within DVU1724at 1797.562 kb on + strand, within DVU1724at 1797.570 kb on - strand, within DVU1724at 1797.660 kb on + strand, within DVU1724at 1797.665 kb on + strand, within DVU1724at 1797.668 kb on - strand, within DVU1724at 1797.668 kb on - strand, within DVU1724at 1797.668 kb on - strand, within DVU1724at 1797.713 kb on + strand, within DVU1724at 1797.713 kb on + strand, within DVU1724at 1797.716 kb on - strand, within DVU1724at 1797.716 kb on - strand, within DVU1724at 1797.723 kb on + strand, within DVU1724at 1797.723 kb on + strand, within DVU1724at 1797.731 kb on - strand, within DVU1724at 1797.736 kb on - strand, within DVU1724at 1797.798 kb on + strand, within DVU1724at 1797.847 kb on + strand, within DVU1724at 1797.866 kb on + strand, within DVU1724at 1797.885 kb on + strand, within DVU1724at 1797.892 kb on - strand, within DVU1724at 1797.906 kb on - strand, within DVU1724at 1797.934 kb on - strand, within DVU1724at 1797.967 kb on + strand, within DVU1724at 1797.985 kb on + strand, within DVU1724at 1798.032 kb on + strand, within DVU1724at 1798.032 kb on + strand, within DVU1724at 1798.032 kb on + strand, within DVU1724at 1798.203 kb on + strand, within DVU1724at 1798.244 kb on - strand, within DVU1724at 1798.263 kb on - strand, within DVU1724at 1798.281 kb on - strand, within DVU1724at 1798.288 kb on - strand, within DVU1724at 1798.341 kb on + strand, within DVU1724at 1798.376 kb on - strand, within DVU1724at 1798.399 kb on - strand, within DVU1724at 1798.407 kb on - strand, within DVU1724at 1798.414 kb on + strand, within DVU1724at 1798.414 kb on + strand, within DVU1724at 1798.421 kb on - strand, within DVU1724at 1798.422 kb on - strand, within DVU1724at 1798.446 kb on + strand, within DVU1724at 1798.498 kb on + strand, within DVU1724at 1798.527 kb on - strand, within DVU1724at 1798.578 kb on - strand, within DVU1724at 1798.600 kb on + strand, within DVU1724at 1798.614 kb on + strand, within DVU1724at 1798.692 kb on - strand, within DVU1724at 1798.731 kb on + strand, within DVU1724at 1798.787 kb on - strandat 1798.789 kb on + strandat 1798.789 kb on + strandat 1798.797 kb on - strandat 1798.797 kb on - strandat 1798.797 kb on - strandat 1798.797 kb on - strandat 1798.858 kb on + strandat 1798.858 kb on + strandat 1798.861 kb on - strandat 1798.933 kb on - strandat 1798.938 kb on - strandat 1799.036 kb on + strand, within DVU1725at 1799.044 kb on - strand, within DVU1725at 1799.141 kb on + strand, within DVU1725at 1799.149 kb on - strand, within DVU1725at 1799.171 kb on + strand, within DVU1725at 1799.171 kb on + strand, within DVU1725at 1799.179 kb on - strand, within DVU1725at 1799.179 kb on - strand, within DVU1725at 1799.218 kb on + strand, within DVU1725at 1799.224 kb on + strand, within DVU1725at 1799.225 kb on - strand, within DVU1725at 1799.274 kb on + strand, within DVU1725at 1799.287 kb on + strand, within DVU1725at 1799.397 kb on + strand, within DVU1725at 1799.433 kb on - strand, within DVU1725at 1799.524 kb on + strandat 1799.806 kb on - strand, within DVU1726

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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1,796,388 - +0.1
1,796,405 + +0.0
1,796,410 + +0.4
1,796,497 + DVU1722 0.72 -1.0
1,796,505 - DVU1722 0.80 -0.3
1,796,510 - DVU1722 0.85 +0.2
1,796,545 - +0.2
1,796,721 + -0.6
1,796,793 - +0.2
1,796,793 - -0.2
1,796,795 + -1.0
1,796,863 - DVU1723 0.15 +0.0
1,796,879 - DVU1723 0.18 +2.6
1,796,901 + DVU1723 0.22 +0.4
1,796,901 + DVU1723 0.22 +0.1
1,796,909 - DVU1723 0.24 -1.1
1,796,909 - DVU1723 0.24 -0.1
1,796,909 - DVU1723 0.24 +2.6
1,796,916 + DVU1723 0.25 +0.6
1,796,924 - DVU1723 0.26 -1.2
1,796,926 + DVU1723 0.27 +0.1
1,797,023 - DVU1723 0.44 +0.6
1,797,105 + DVU1723 0.59 -0.2
1,797,153 + DVU1723 0.68 -1.5
1,797,200 - DVU1723 0.76 -0.6
1,797,225 + DVU1723 0.81 -0.6
1,797,232 + DVU1723 0.82 -0.8
1,797,233 - DVU1723 0.82 -0.2
1,797,453 - +0.8
1,797,562 + DVU1724 0.15 +0.1
1,797,562 + DVU1724 0.15 +0.1
1,797,570 - DVU1724 0.15 +0.1
1,797,660 + DVU1724 0.21 -0.8
1,797,665 + DVU1724 0.21 -0.0
1,797,668 - DVU1724 0.21 +0.0
1,797,668 - DVU1724 0.21 +0.4
1,797,668 - DVU1724 0.21 -0.4
1,797,713 + DVU1724 0.24 +1.3
1,797,713 + DVU1724 0.24 +0.6
1,797,716 - DVU1724 0.24 +0.2
1,797,716 - DVU1724 0.24 +1.3
1,797,723 + DVU1724 0.25 +0.3
1,797,723 + DVU1724 0.25 -0.3
1,797,731 - DVU1724 0.25 -1.0
1,797,736 - DVU1724 0.25 +0.2
1,797,798 + DVU1724 0.29 +0.8
1,797,847 + DVU1724 0.32 +0.3
1,797,866 + DVU1724 0.33 +0.3
1,797,885 + DVU1724 0.35 +1.2
1,797,892 - DVU1724 0.35 -0.3
1,797,906 - DVU1724 0.36 +0.3
1,797,934 - DVU1724 0.38 -0.0
1,797,967 + DVU1724 0.40 +0.0
1,797,985 + DVU1724 0.41 -0.5
1,798,032 + DVU1724 0.44 -0.0
1,798,032 + DVU1724 0.44 -0.7
1,798,032 + DVU1724 0.44 +0.2
1,798,203 + DVU1724 0.54 +0.1
1,798,244 - DVU1724 0.57 +0.7
1,798,263 - DVU1724 0.58 -0.3
1,798,281 - DVU1724 0.59 +0.1
1,798,288 - DVU1724 0.60 -1.3
1,798,341 + DVU1724 0.63 +0.1
1,798,376 - DVU1724 0.65 +0.1
1,798,399 - DVU1724 0.67 +0.7
1,798,407 - DVU1724 0.67 -0.4
1,798,414 + DVU1724 0.68 +0.0
1,798,414 + DVU1724 0.68 -0.5
1,798,421 - DVU1724 0.68 +0.5
1,798,422 - DVU1724 0.68 -0.9
1,798,446 + DVU1724 0.70 -1.3
1,798,498 + DVU1724 0.73 -1.5
1,798,527 - DVU1724 0.75 +0.1
1,798,578 - DVU1724 0.78 +0.0
1,798,600 + DVU1724 0.79 +0.4
1,798,614 + DVU1724 0.80 -0.1
1,798,692 - DVU1724 0.85 -0.5
1,798,731 + DVU1724 0.87 +1.2
1,798,787 - +1.0
1,798,789 + +0.9
1,798,789 + +0.6
1,798,797 - +0.1
1,798,797 - -0.9
1,798,797 - -0.5
1,798,797 - -0.0
1,798,858 + -1.0
1,798,858 + -0.1
1,798,861 - -1.0
1,798,933 - +0.6
1,798,938 - -0.5
1,799,036 + DVU1725 0.19 +0.1
1,799,044 - DVU1725 0.20 -0.9
1,799,141 + DVU1725 0.36 +0.3
1,799,149 - DVU1725 0.38 -0.2
1,799,171 + DVU1725 0.41 -1.1
1,799,171 + DVU1725 0.41 +0.0
1,799,179 - DVU1725 0.43 -0.0
1,799,179 - DVU1725 0.43 -0.2
1,799,218 + DVU1725 0.49 +0.3
1,799,224 + DVU1725 0.50 +0.0
1,799,225 - DVU1725 0.50 -0.1
1,799,274 + DVU1725 0.58 +0.6
1,799,287 + DVU1725 0.60 -0.9
1,799,397 + DVU1725 0.78 -0.7
1,799,433 - DVU1725 0.84 +0.3
1,799,524 + +1.2
1,799,806 - DVU1726 0.57 +0.2

Or see this region's nucleotide sequence