Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt folK and DVU1657 are separated by 24 nucleotides DVU1657 and DVU1658 are separated by 257 nucleotides DVU1658 and tRNA-Met are separated by 662 nucleotides tRNA-Met and DVU1660 are separated by 97 nucleotides
DVU1656: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (TIGR), at 1,737,836 to 1,738,261
folK
DVU1657: DVU1657 - hypothetical protein (TIGR), at 1,738,286 to 1,738,585
DVU1657
DVU1658: DVU1658 - transaldolase, putative (TIGR), at 1,738,843 to 1,739,490
DVU1658
DVU_tRNA-Met-3: tRNA-Met - tRNA with anticodon CAT for Met (VIMSS-AUTO), at 1,740,153 to 1,740,229
tRNA-Met
DVU1660: DVU1660 - undecaprenol kinase, putative (TIGR), at 1,740,327 to 1,741,124
DVU1660
Position (kb)
1738
1739
1740 Strain fitness (log2 ratio)
-1
0
1
2 at 1738.685 kb on + strand at 1738.751 kb on + strand at 1738.807 kb on - strand at 1739.014 kb on - strand, within DVU1658 at 1739.143 kb on + strand, within DVU1658 at 1739.261 kb on + strand, within DVU1658 at 1739.276 kb on - strand, within DVU1658 at 1739.333 kb on + strand, within DVU1658 at 1739.365 kb on + strand, within DVU1658 at 1739.503 kb on + strand at 1739.529 kb on + strand at 1739.629 kb on - strand at 1739.664 kb on - strand at 1739.717 kb on - strand at 1739.890 kb on + strand at 1739.912 kb on + strand at 1739.985 kb on + strand at 1739.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 1,738,685 + +0.6 1,738,751 + -0.0 1,738,807 - -1.4 1,739,014 - DVU1658 0.26 +1.4 1,739,143 + DVU1658 0.46 +0.5 1,739,261 + DVU1658 0.65 -1.0 1,739,276 - DVU1658 0.67 -0.0 1,739,333 + DVU1658 0.76 +0.7 1,739,365 + DVU1658 0.81 +2.2 1,739,503 + -1.0 1,739,529 + +0.0 1,739,629 - +0.1 1,739,664 - -0.8 1,739,717 - +0.6 1,739,890 + -1.2 1,739,912 + -0.7 1,739,985 + +0.2 1,739,993 - -0.8
Or see this region's nucleotide sequence