Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1658

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfolK and DVU1657 are separated by 24 nucleotidesDVU1657 and DVU1658 are separated by 257 nucleotidesDVU1658 and tRNA-Met are separated by 662 nucleotidestRNA-Met and DVU1660 are separated by 97 nucleotides DVU1656: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (TIGR), at 1,737,836 to 1,738,261 folK DVU1657: DVU1657 - hypothetical protein (TIGR), at 1,738,286 to 1,738,585 DVU1657 DVU1658: DVU1658 - transaldolase, putative (TIGR), at 1,738,843 to 1,739,490 DVU1658 DVU_tRNA-Met-3: tRNA-Met - tRNA with anticodon CAT for Met (VIMSS-AUTO), at 1,740,153 to 1,740,229 tRNA-Met DVU1660: DVU1660 - undecaprenol kinase, putative (TIGR), at 1,740,327 to 1,741,124 DVU1660 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -1 0 1 2at 1738.685 kb on + strandat 1738.751 kb on + strandat 1738.807 kb on - strandat 1739.014 kb on - strand, within DVU1658at 1739.143 kb on + strand, within DVU1658at 1739.261 kb on + strand, within DVU1658at 1739.276 kb on - strand, within DVU1658at 1739.333 kb on + strand, within DVU1658at 1739.365 kb on + strand, within DVU1658at 1739.503 kb on + strandat 1739.529 kb on + strandat 1739.629 kb on - strandat 1739.664 kb on - strandat 1739.717 kb on - strandat 1739.890 kb on + strandat 1739.912 kb on + strandat 1739.985 kb on + strandat 1739.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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1,738,685 + +0.6
1,738,751 + -0.0
1,738,807 - -1.4
1,739,014 - DVU1658 0.26 +1.4
1,739,143 + DVU1658 0.46 +0.5
1,739,261 + DVU1658 0.65 -1.0
1,739,276 - DVU1658 0.67 -0.0
1,739,333 + DVU1658 0.76 +0.7
1,739,365 + DVU1658 0.81 +2.2
1,739,503 + -1.0
1,739,529 + +0.0
1,739,629 - +0.1
1,739,664 - -0.8
1,739,717 - +0.6
1,739,890 + -1.2
1,739,912 + -0.7
1,739,985 + +0.2
1,739,993 - -0.8

Or see this region's nucleotide sequence