Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1517

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcm and DVU1516 are separated by 202 nucleotidesDVU1516 and DVU1517 overlap by 4 nucleotidesDVU1517 and DVU1518 are separated by 210 nucleotidesDVU1518 and DVU1519 are separated by 56 nucleotides DVU1515: dcm - type II DNA modification methyltransferase, putative (TIGR), at 1,585,461 to 1,586,924 dcm DVU1516: DVU1516 - hypothetical protein (TIGR), at 1,587,127 to 1,587,486 DVU1516 DVU1517: DVU1517 - transcriptional regulator cII, putative (TIGR), at 1,587,483 to 1,587,896 DVU1517 DVU1518: DVU1518 - transcriptional regulator cI, truncation (TIGR), at 1,588,107 to 1,588,397 DVU1518 DVU1519: DVU1519 - transcriptional regulator, putative (TIGR), at 1,588,454 to 1,589,107 DVU1519 Position (kb) 1587 1588Strain fitness (log2 ratio) -2 -1 0 1at 1586.664 kb on + strand, within dcmat 1586.680 kb on + strand, within dcmat 1586.683 kb on - strand, within dcmat 1586.688 kb on - strand, within dcmat 1586.688 kb on - strand, within dcmat 1586.748 kb on - strand, within dcmat 1586.753 kb on + strand, within dcmat 1586.753 kb on + strand, within dcmat 1586.792 kb on - strandat 1586.794 kb on + strandat 1586.927 kb on - strandat 1587.009 kb on + strandat 1587.064 kb on + strandat 1587.084 kb on - strandat 1587.276 kb on + strand, within DVU1516at 1587.288 kb on + strand, within DVU1516at 1587.346 kb on + strand, within DVU1516at 1587.346 kb on + strand, within DVU1516at 1587.354 kb on - strand, within DVU1516at 1587.426 kb on + strand, within DVU1516at 1587.478 kb on + strandat 1587.557 kb on + strand, within DVU1517at 1587.558 kb on - strand, within DVU1517at 1587.565 kb on - strand, within DVU1517at 1587.565 kb on - strand, within DVU1517at 1587.570 kb on - strand, within DVU1517at 1587.570 kb on - strand, within DVU1517at 1587.570 kb on - strand, within DVU1517at 1587.707 kb on - strand, within DVU1517at 1587.708 kb on - strand, within DVU1517at 1587.780 kb on + strand, within DVU1517at 1587.805 kb on + strand, within DVU1517at 1587.908 kb on + strandat 1587.944 kb on + strandat 1587.944 kb on + strandat 1587.958 kb on + strandat 1588.050 kb on - strandat 1588.105 kb on + strandat 1588.113 kb on - strandat 1588.166 kb on + strand, within DVU1518at 1588.195 kb on - strand, within DVU1518at 1588.210 kb on - strand, within DVU1518

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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1,586,664 + dcm DVU1515 0.82 -0.1
1,586,680 + dcm DVU1515 0.83 -0.6
1,586,683 - dcm DVU1515 0.83 +0.0
1,586,688 - dcm DVU1515 0.84 +1.3
1,586,688 - dcm DVU1515 0.84 -0.4
1,586,748 - dcm DVU1515 0.88 -0.9
1,586,753 + dcm DVU1515 0.88 -0.1
1,586,753 + dcm DVU1515 0.88 -0.0
1,586,792 - -0.3
1,586,794 + -0.8
1,586,927 - +0.7
1,587,009 + -0.1
1,587,064 + -0.2
1,587,084 - -0.1
1,587,276 + DVU1516 0.41 +0.1
1,587,288 + DVU1516 0.45 -0.7
1,587,346 + DVU1516 0.61 -1.1
1,587,346 + DVU1516 0.61 -0.2
1,587,354 - DVU1516 0.63 -0.3
1,587,426 + DVU1516 0.83 +1.3
1,587,478 + +0.1
1,587,557 + DVU1517 0.18 +0.1
1,587,558 - DVU1517 0.18 +1.0
1,587,565 - DVU1517 0.20 -2.1
1,587,565 - DVU1517 0.20 +0.2
1,587,570 - DVU1517 0.21 -2.3
1,587,570 - DVU1517 0.21 -0.1
1,587,570 - DVU1517 0.21 -0.1
1,587,707 - DVU1517 0.54 +0.9
1,587,708 - DVU1517 0.54 +0.0
1,587,780 + DVU1517 0.72 +0.1
1,587,805 + DVU1517 0.78 +0.1
1,587,908 + +0.3
1,587,944 + -0.2
1,587,944 + -0.9
1,587,958 + +0.0
1,588,050 - -1.0
1,588,105 + +0.5
1,588,113 - -2.2
1,588,166 + DVU1518 0.20 -0.7
1,588,195 - DVU1518 0.30 +0.5
1,588,210 - DVU1518 0.35 -0.1

Or see this region's nucleotide sequence