Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcm and DVU1516 are separated by 202 nucleotides DVU1516 and DVU1517 overlap by 4 nucleotides DVU1517 and DVU1518 are separated by 210 nucleotides DVU1518 and DVU1519 are separated by 56 nucleotides
DVU1515: dcm - type II DNA modification methyltransferase, putative (TIGR), at 1,585,461 to 1,586,924
dcm
DVU1516: DVU1516 - hypothetical protein (TIGR), at 1,587,127 to 1,587,486
DVU1516
DVU1517: DVU1517 - transcriptional regulator cII, putative (TIGR), at 1,587,483 to 1,587,896
DVU1517
DVU1518: DVU1518 - transcriptional regulator cI, truncation (TIGR), at 1,588,107 to 1,588,397
DVU1518
DVU1519: DVU1519 - transcriptional regulator, putative (TIGR), at 1,588,454 to 1,589,107
DVU1519
Position (kb)
1587
1588 Strain fitness (log2 ratio)
-2
-1
0
1 at 1586.664 kb on + strand, within dcm at 1586.680 kb on + strand, within dcm at 1586.683 kb on - strand, within dcm at 1586.688 kb on - strand, within dcm at 1586.688 kb on - strand, within dcm at 1586.748 kb on - strand, within dcm at 1586.753 kb on + strand, within dcm at 1586.753 kb on + strand, within dcm at 1586.792 kb on - strand at 1586.794 kb on + strand at 1586.927 kb on - strand at 1587.009 kb on + strand at 1587.064 kb on + strand at 1587.084 kb on - strand at 1587.276 kb on + strand, within DVU1516 at 1587.288 kb on + strand, within DVU1516 at 1587.346 kb on + strand, within DVU1516 at 1587.346 kb on + strand, within DVU1516 at 1587.354 kb on - strand, within DVU1516 at 1587.426 kb on + strand, within DVU1516 at 1587.478 kb on + strand at 1587.557 kb on + strand, within DVU1517 at 1587.558 kb on - strand, within DVU1517 at 1587.565 kb on - strand, within DVU1517 at 1587.565 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.707 kb on - strand, within DVU1517 at 1587.708 kb on - strand, within DVU1517 at 1587.780 kb on + strand, within DVU1517 at 1587.805 kb on + strand, within DVU1517 at 1587.908 kb on + strand at 1587.944 kb on + strand at 1587.944 kb on + strand at 1587.958 kb on + strand at 1588.050 kb on - strand at 1588.105 kb on + strand at 1588.113 kb on - strand at 1588.166 kb on + strand, within DVU1518 at 1588.195 kb on - strand, within DVU1518 at 1588.210 kb on - strand, within DVU1518
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 1,586,664 + dcm DVU1515 0.82 -0.1 1,586,680 + dcm DVU1515 0.83 -0.6 1,586,683 - dcm DVU1515 0.83 +0.0 1,586,688 - dcm DVU1515 0.84 +1.3 1,586,688 - dcm DVU1515 0.84 -0.4 1,586,748 - dcm DVU1515 0.88 -0.9 1,586,753 + dcm DVU1515 0.88 -0.1 1,586,753 + dcm DVU1515 0.88 -0.0 1,586,792 - -0.3 1,586,794 + -0.8 1,586,927 - +0.7 1,587,009 + -0.1 1,587,064 + -0.2 1,587,084 - -0.1 1,587,276 + DVU1516 0.41 +0.1 1,587,288 + DVU1516 0.45 -0.7 1,587,346 + DVU1516 0.61 -1.1 1,587,346 + DVU1516 0.61 -0.2 1,587,354 - DVU1516 0.63 -0.3 1,587,426 + DVU1516 0.83 +1.3 1,587,478 + +0.1 1,587,557 + DVU1517 0.18 +0.1 1,587,558 - DVU1517 0.18 +1.0 1,587,565 - DVU1517 0.20 -2.1 1,587,565 - DVU1517 0.20 +0.2 1,587,570 - DVU1517 0.21 -2.3 1,587,570 - DVU1517 0.21 -0.1 1,587,570 - DVU1517 0.21 -0.1 1,587,707 - DVU1517 0.54 +0.9 1,587,708 - DVU1517 0.54 +0.0 1,587,780 + DVU1517 0.72 +0.1 1,587,805 + DVU1517 0.78 +0.1 1,587,908 + +0.3 1,587,944 + -0.2 1,587,944 + -0.9 1,587,958 + +0.0 1,588,050 - -1.0 1,588,105 + +0.5 1,588,113 - -2.2 1,588,166 + DVU1518 0.20 -0.7 1,588,195 - DVU1518 0.30 +0.5 1,588,210 - DVU1518 0.35 -0.1
Or see this region's nucleotide sequence