Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1185 and mazG are separated by 27 nucleotides mazG and DVU1187 are separated by 116 nucleotides DVU1187 and DVU1188 are separated by 47 nucleotides DVU1188 and DVU1189 overlap by 4 nucleotides
DVU1185: DVU1185 - colicin V production family protein (TIGR), at 1,274,805 to 1,275,284
DVU1185
DVU1186: mazG - phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) (from data) , at 1,275,312 to 1,276,115
mazG
DVU1187: DVU1187 - hypothetical protein (TIGR), at 1,276,232 to 1,277,056
DVU1187
DVU1188: DVU1188 - hypothetical protein (TIGR), at 1,277,104 to 1,277,325
DVU1188
DVU1189: DVU1189 - conserved hypothetical protein (TIGR), at 1,277,322 to 1,278,521
DVU1189
Position (kb)
1276
1277
1278 Strain fitness (log2 ratio)
-1
0
1 at 1275.263 kb on - strand at 1275.330 kb on + strand at 1275.370 kb on + strand at 1275.372 kb on + strand at 1275.439 kb on + strand, within mazG at 1275.524 kb on + strand, within mazG at 1275.637 kb on - strand, within mazG at 1275.725 kb on - strand, within mazG at 1275.830 kb on + strand, within mazG at 1275.883 kb on - strand, within mazG at 1275.979 kb on + strand, within mazG at 1276.052 kb on + strand at 1276.118 kb on - strand at 1276.143 kb on - strand at 1276.214 kb on + strand at 1276.254 kb on - strand at 1276.276 kb on - strand at 1276.327 kb on + strand, within DVU1187 at 1276.327 kb on + strand, within DVU1187 at 1276.344 kb on - strand, within DVU1187 at 1276.495 kb on + strand, within DVU1187 at 1276.510 kb on + strand, within DVU1187 at 1276.569 kb on - strand, within DVU1187 at 1276.666 kb on + strand, within DVU1187 at 1276.704 kb on + strand, within DVU1187 at 1276.933 kb on - strand, within DVU1187 at 1276.938 kb on - strand, within DVU1187 at 1276.938 kb on - strand, within DVU1187 at 1276.993 kb on - strand at 1277.041 kb on + strand at 1277.087 kb on + strand at 1277.182 kb on - strand, within DVU1188 at 1277.215 kb on - strand, within DVU1188 at 1277.220 kb on - strand, within DVU1188 at 1277.226 kb on - strand, within DVU1188 at 1277.287 kb on - strand, within DVU1188 at 1277.400 kb on + strand at 1277.479 kb on + strand, within DVU1189 at 1277.479 kb on + strand, within DVU1189 at 1277.484 kb on + strand, within DVU1189 at 1277.487 kb on - strand, within DVU1189 at 1277.536 kb on + strand, within DVU1189 at 1277.702 kb on - strand, within DVU1189 at 1277.703 kb on + strand, within DVU1189 at 1277.735 kb on - strand, within DVU1189 at 1277.789 kb on + strand, within DVU1189 at 1277.865 kb on + strand, within DVU1189 at 1277.900 kb on + strand, within DVU1189 at 1277.932 kb on + strand, within DVU1189 at 1277.940 kb on - strand, within DVU1189 at 1277.945 kb on - strand, within DVU1189
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 1,275,263 - -0.4 1,275,330 + -1.6 1,275,370 + +0.2 1,275,372 + +0.2 1,275,439 + mazG DVU1186 0.16 -0.9 1,275,524 + mazG DVU1186 0.26 -0.5 1,275,637 - mazG DVU1186 0.40 -0.0 1,275,725 - mazG DVU1186 0.51 +0.2 1,275,830 + mazG DVU1186 0.64 -0.8 1,275,883 - mazG DVU1186 0.71 +0.5 1,275,979 + mazG DVU1186 0.83 -1.3 1,276,052 + -0.9 1,276,118 - -0.4 1,276,143 - +0.0 1,276,214 + -0.5 1,276,254 - -0.5 1,276,276 - -1.0 1,276,327 + DVU1187 0.12 -0.1 1,276,327 + DVU1187 0.12 -0.3 1,276,344 - DVU1187 0.14 -0.2 1,276,495 + DVU1187 0.32 -0.4 1,276,510 + DVU1187 0.34 -0.6 1,276,569 - DVU1187 0.41 -0.0 1,276,666 + DVU1187 0.53 +0.2 1,276,704 + DVU1187 0.57 +1.1 1,276,933 - DVU1187 0.85 +0.1 1,276,938 - DVU1187 0.86 -0.1 1,276,938 - DVU1187 0.86 +0.5 1,276,993 - -0.2 1,277,041 + +1.0 1,277,087 + -0.2 1,277,182 - DVU1188 0.35 -0.8 1,277,215 - DVU1188 0.50 +1.1 1,277,220 - DVU1188 0.52 -0.7 1,277,226 - DVU1188 0.55 -0.7 1,277,287 - DVU1188 0.82 +0.4 1,277,400 + -0.4 1,277,479 + DVU1189 0.13 +0.4 1,277,479 + DVU1189 0.13 -1.2 1,277,484 + DVU1189 0.14 -1.1 1,277,487 - DVU1189 0.14 -1.4 1,277,536 + DVU1189 0.18 -0.3 1,277,702 - DVU1189 0.32 -0.1 1,277,703 + DVU1189 0.32 -0.8 1,277,735 - DVU1189 0.34 -1.0 1,277,789 + DVU1189 0.39 -0.8 1,277,865 + DVU1189 0.45 -0.1 1,277,900 + DVU1189 0.48 -1.2 1,277,932 + DVU1189 0.51 -0.3 1,277,940 - DVU1189 0.52 -0.7 1,277,945 - DVU1189 0.52 -0.0
Or see this region's nucleotide sequence