Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1157 and DVU1158 are separated by 255 nucleotides DVU1158 and DVU1159 are separated by 182 nucleotides DVU1159 and DVU1160 are separated by 175 nucleotides
DVU1157: DVU1157 - sensory box histidine kinase (TIGR), at 1,248,807 to 1,252,064
DVU1157
DVU1158: DVU1158 - hypothetical protein (TIGR), at 1,252,320 to 1,252,634
DVU1158
DVU1159: DVU1159 - hypothetical protein (TIGR), at 1,252,817 to 1,252,963
DVU1159
DVU1160: DVU1160 - urea transporter, putative (TIGR), at 1,253,139 to 1,254,152
DVU1160
Position (kb)
1252
1253 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1251.324 kb on - strand, within DVU1157 at 1251.365 kb on + strand, within DVU1157 at 1251.385 kb on + strand, within DVU1157 at 1251.408 kb on + strand, within DVU1157 at 1251.466 kb on + strand, within DVU1157 at 1251.484 kb on - strand, within DVU1157 at 1251.484 kb on - strand, within DVU1157 at 1251.508 kb on + strand, within DVU1157 at 1251.528 kb on + strand, within DVU1157 at 1251.534 kb on + strand, within DVU1157 at 1251.598 kb on - strand, within DVU1157 at 1251.662 kb on - strand, within DVU1157 at 1251.671 kb on - strand, within DVU1157 at 1251.672 kb on - strand, within DVU1157 at 1251.768 kb on - strand at 1251.812 kb on + strand at 1251.847 kb on + strand at 1251.885 kb on + strand at 1251.912 kb on - strand at 1251.974 kb on - strand at 1252.056 kb on + strand at 1252.074 kb on - strand at 1252.124 kb on + strand at 1252.176 kb on + strand at 1252.230 kb on - strand at 1252.254 kb on - strand at 1252.483 kb on - strand, within DVU1158 at 1252.553 kb on + strand, within DVU1158 at 1252.632 kb on - strand at 1252.757 kb on + strand at 1252.774 kb on - strand at 1252.830 kb on + strand at 1252.870 kb on - strand, within DVU1159 at 1253.002 kb on + strand at 1253.045 kb on + strand at 1253.069 kb on + strand at 1253.266 kb on + strand, within DVU1160 at 1253.266 kb on + strand, within DVU1160 at 1253.271 kb on + strand, within DVU1160 at 1253.363 kb on - strand, within DVU1160 at 1253.409 kb on + strand, within DVU1160 at 1253.433 kb on - strand, within DVU1160 at 1253.479 kb on + strand, within DVU1160 at 1253.479 kb on + strand, within DVU1160 at 1253.492 kb on + strand, within DVU1160 at 1253.516 kb on + strand, within DVU1160 at 1253.516 kb on + strand, within DVU1160 at 1253.580 kb on - strand, within DVU1160 at 1253.602 kb on + strand, within DVU1160 at 1253.610 kb on - strand, within DVU1160 at 1253.633 kb on + strand, within DVU1160
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 1,251,324 - DVU1157 0.77 -1.1 1,251,365 + DVU1157 0.79 -0.5 1,251,385 + DVU1157 0.79 +0.0 1,251,408 + DVU1157 0.80 -1.8 1,251,466 + DVU1157 0.82 -1.7 1,251,484 - DVU1157 0.82 -0.4 1,251,484 - DVU1157 0.82 -1.2 1,251,508 + DVU1157 0.83 -0.5 1,251,528 + DVU1157 0.84 -0.5 1,251,534 + DVU1157 0.84 -0.3 1,251,598 - DVU1157 0.86 -0.2 1,251,662 - DVU1157 0.88 -0.3 1,251,671 - DVU1157 0.88 -1.2 1,251,672 - DVU1157 0.88 -0.0 1,251,768 - +0.5 1,251,812 + -1.9 1,251,847 + -1.6 1,251,885 + -1.2 1,251,912 - -0.9 1,251,974 - +0.2 1,252,056 + +1.8 1,252,074 - +0.8 1,252,124 + -0.1 1,252,176 + -0.9 1,252,230 - -1.2 1,252,254 - +0.5 1,252,483 - DVU1158 0.52 +0.4 1,252,553 + DVU1158 0.74 -1.7 1,252,632 - -0.2 1,252,757 + +0.1 1,252,774 - -0.8 1,252,830 + +0.3 1,252,870 - DVU1159 0.36 +0.5 1,253,002 + -1.3 1,253,045 + -0.0 1,253,069 + +0.2 1,253,266 + DVU1160 0.13 -1.1 1,253,266 + DVU1160 0.13 +0.1 1,253,271 + DVU1160 0.13 -0.5 1,253,363 - DVU1160 0.22 +0.2 1,253,409 + DVU1160 0.27 -0.6 1,253,433 - DVU1160 0.29 -0.0 1,253,479 + DVU1160 0.34 -0.6 1,253,479 + DVU1160 0.34 -0.0 1,253,492 + DVU1160 0.35 -0.3 1,253,516 + DVU1160 0.37 +0.2 1,253,516 + DVU1160 0.37 -0.3 1,253,580 - DVU1160 0.43 +0.6 1,253,602 + DVU1160 0.46 -0.9 1,253,610 - DVU1160 0.46 -0.4 1,253,633 + DVU1160 0.49 -0.4
Or see this region's nucleotide sequence