Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1133

Experiment: MoLS4 with L-Arginine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1130 and DVU1131 overlap by 17 nucleotidesDVU1131 and DVU1132 overlap by 4 nucleotidesDVU1132 and DVU1133 overlap by 37 nucleotidesDVU1133 and hupB are separated by 81 nucleotideshupB and DVU1135 are separated by 13 nucleotidesDVU1135 and DVU1136 are separated by 17 nucleotides DVU1130: DVU1130 - DNA-binding protein (TIGR), at 1,231,221 to 1,231,685 DVU1130 DVU1131: DVU1131 - hypothetical protein (TIGR), at 1,231,669 to 1,232,034 DVU1131 DVU1132: DVU1132 - conserved hypothetical protein (TIGR), at 1,232,031 to 1,232,540 DVU1132 DVU1133: DVU1133 - hypothetical protein (TIGR), at 1,232,504 to 1,232,962 DVU1133 DVU1134: hupB - DNA-binding protein HU, beta subunit (TIGR), at 1,233,044 to 1,233,331 hupB DVU1135: DVU1135 - conserved domain protein (TIGR), at 1,233,345 to 1,233,584 DVU1135 DVU1136: DVU1136 - host-nuclease inhibitor protein Gam, putative (TIGR), at 1,233,602 to 1,234,114 DVU1136 Position (kb) 1232 1233Strain fitness (log2 ratio) -3 -2 -1 0 1at 1231.539 kb on - strand, within DVU1130at 1231.588 kb on + strand, within DVU1130at 1231.598 kb on - strand, within DVU1130at 1231.727 kb on + strand, within DVU1131at 1231.727 kb on + strand, within DVU1131at 1231.758 kb on + strand, within DVU1131at 1231.776 kb on - strand, within DVU1131at 1231.777 kb on + strand, within DVU1131at 1231.783 kb on - strand, within DVU1131at 1231.784 kb on + strand, within DVU1131at 1231.836 kb on - strand, within DVU1131at 1231.869 kb on - strand, within DVU1131at 1232.257 kb on - strand, within DVU1132at 1232.287 kb on - strand, within DVU1132at 1232.344 kb on + strand, within DVU1132at 1232.474 kb on + strand, within DVU1132at 1232.479 kb on + strand, within DVU1132at 1232.479 kb on + strand, within DVU1132at 1232.479 kb on + strand, within DVU1132at 1232.487 kb on - strand, within DVU1132at 1232.554 kb on + strand, within DVU1133at 1232.578 kb on + strand, within DVU1133at 1232.689 kb on + strand, within DVU1133at 1232.836 kb on + strand, within DVU1133at 1232.890 kb on + strand, within DVU1133at 1232.903 kb on + strand, within DVU1133at 1233.054 kb on - strandat 1233.073 kb on - strand, within hupBat 1233.121 kb on - strand, within hupBat 1233.201 kb on + strand, within hupBat 1233.209 kb on - strand, within hupBat 1233.229 kb on + strand, within hupBat 1233.236 kb on - strand, within hupBat 1233.246 kb on - strand, within hupBat 1233.259 kb on - strand, within hupBat 1233.278 kb on - strand, within hupBat 1233.299 kb on - strand, within hupBat 1233.304 kb on - strandat 1233.304 kb on - strandat 1233.315 kb on + strandat 1233.483 kb on + strand, within DVU1135at 1233.514 kb on + strand, within DVU1135at 1233.538 kb on + strand, within DVU1135at 1233.564 kb on + strandat 1233.783 kb on + strand, within DVU1136at 1233.791 kb on - strand, within DVU1136at 1233.845 kb on + strand, within DVU1136at 1233.888 kb on + strand, within DVU1136at 1233.888 kb on + strand, within DVU1136at 1233.896 kb on - strand, within DVU1136at 1233.928 kb on + strand, within DVU1136

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
remove
1,231,539 - DVU1130 0.68 -0.0
1,231,588 + DVU1130 0.79 -0.3
1,231,598 - DVU1130 0.81 -1.3
1,231,727 + DVU1131 0.16 +0.2
1,231,727 + DVU1131 0.16 -0.9
1,231,758 + DVU1131 0.24 +0.5
1,231,776 - DVU1131 0.29 -0.4
1,231,777 + DVU1131 0.30 -0.3
1,231,783 - DVU1131 0.31 -0.3
1,231,784 + DVU1131 0.31 +0.0
1,231,836 - DVU1131 0.46 -0.8
1,231,869 - DVU1131 0.55 -0.4
1,232,257 - DVU1132 0.44 -0.3
1,232,287 - DVU1132 0.50 -0.9
1,232,344 + DVU1132 0.61 -1.0
1,232,474 + DVU1132 0.87 -0.1
1,232,479 + DVU1132 0.88 +0.1
1,232,479 + DVU1132 0.88 -0.8
1,232,479 + DVU1132 0.88 -0.4
1,232,487 - DVU1132 0.89 -1.3
1,232,554 + DVU1133 0.11 +0.9
1,232,578 + DVU1133 0.16 +0.9
1,232,689 + DVU1133 0.40 -1.1
1,232,836 + DVU1133 0.72 -0.2
1,232,890 + DVU1133 0.84 +0.0
1,232,903 + DVU1133 0.87 -0.1
1,233,054 - +0.2
1,233,073 - hupB DVU1134 0.10 +1.7
1,233,121 - hupB DVU1134 0.27 +0.2
1,233,201 + hupB DVU1134 0.55 -0.9
1,233,209 - hupB DVU1134 0.57 -0.3
1,233,229 + hupB DVU1134 0.64 +0.0
1,233,236 - hupB DVU1134 0.67 -1.1
1,233,246 - hupB DVU1134 0.70 -0.3
1,233,259 - hupB DVU1134 0.75 -0.2
1,233,278 - hupB DVU1134 0.81 +0.7
1,233,299 - hupB DVU1134 0.89 -0.2
1,233,304 - -3.3
1,233,304 - -2.5
1,233,315 + +0.0
1,233,483 + DVU1135 0.57 -0.4
1,233,514 + DVU1135 0.70 -1.0
1,233,538 + DVU1135 0.80 +1.3
1,233,564 + -0.2
1,233,783 + DVU1136 0.35 -0.0
1,233,791 - DVU1136 0.37 -0.5
1,233,845 + DVU1136 0.47 +0.1
1,233,888 + DVU1136 0.56 +0.5
1,233,888 + DVU1136 0.56 +0.4
1,233,896 - DVU1136 0.57 -0.2
1,233,928 + DVU1136 0.64 +0.2

Or see this region's nucleotide sequence