Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1103

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1102 and DVU1103 are separated by 4 nucleotidesDVU1103 and DVU1104 overlap by 4 nucleotidesDVU1104 and DVU1105 overlap by 14 nucleotides DVU1102: DVU1102 - baseplate assembly protein, putative (TIGR), at 1,208,201 to 1,209,355 DVU1102 DVU1103: DVU1103 - baseplate assembly protein, putative (TIGR), at 1,209,360 to 1,209,794 DVU1103 DVU1104: DVU1104 - baseplate assembly protein, putative (TIGR), at 1,209,791 to 1,210,522 DVU1104 DVU1105: DVU1105 - hypothetical protein (TIGR), at 1,210,509 to 1,211,309 DVU1105 Position (kb) 1209 1210Strain fitness (log2 ratio) -2 -1 0 1 2at 1208.364 kb on - strand, within DVU1102at 1208.364 kb on - strand, within DVU1102at 1208.414 kb on + strand, within DVU1102at 1208.417 kb on - strand, within DVU1102at 1208.446 kb on + strand, within DVU1102at 1208.466 kb on + strand, within DVU1102at 1208.466 kb on + strand, within DVU1102at 1208.466 kb on + strand, within DVU1102at 1208.474 kb on - strand, within DVU1102at 1208.516 kb on - strand, within DVU1102at 1208.525 kb on - strand, within DVU1102at 1208.558 kb on - strand, within DVU1102at 1208.567 kb on + strand, within DVU1102at 1208.582 kb on - strand, within DVU1102at 1208.592 kb on + strand, within DVU1102at 1208.648 kb on - strand, within DVU1102at 1208.648 kb on - strand, within DVU1102at 1208.648 kb on - strand, within DVU1102at 1208.653 kb on - strand, within DVU1102at 1208.669 kb on - strand, within DVU1102at 1208.721 kb on + strand, within DVU1102at 1208.736 kb on + strand, within DVU1102at 1208.740 kb on + strand, within DVU1102at 1208.814 kb on - strand, within DVU1102at 1208.904 kb on + strand, within DVU1102at 1208.904 kb on + strand, within DVU1102at 1208.910 kb on + strand, within DVU1102at 1208.912 kb on - strand, within DVU1102at 1208.920 kb on + strand, within DVU1102at 1208.920 kb on + strand, within DVU1102at 1208.925 kb on + strand, within DVU1102at 1208.925 kb on + strand, within DVU1102at 1208.959 kb on + strand, within DVU1102at 1209.031 kb on + strand, within DVU1102at 1209.071 kb on + strand, within DVU1102at 1209.087 kb on - strand, within DVU1102at 1209.113 kb on + strand, within DVU1102at 1209.125 kb on - strand, within DVU1102at 1209.139 kb on + strand, within DVU1102at 1209.148 kb on + strand, within DVU1102at 1209.287 kb on + strandat 1209.315 kb on + strandat 1209.315 kb on + strandat 1209.334 kb on + strandat 1209.342 kb on - strandat 1209.357 kb on + strandat 1209.365 kb on - strandat 1209.400 kb on + strandat 1209.414 kb on - strand, within DVU1103at 1209.474 kb on - strand, within DVU1103at 1209.566 kb on - strand, within DVU1103at 1209.568 kb on - strand, within DVU1103at 1209.625 kb on - strand, within DVU1103at 1209.627 kb on + strand, within DVU1103at 1209.627 kb on + strand, within DVU1103at 1209.640 kb on + strand, within DVU1103at 1209.648 kb on + strand, within DVU1103at 1209.771 kb on + strandat 1209.779 kb on - strandat 1209.779 kb on - strandat 1209.950 kb on + strand, within DVU1104at 1209.958 kb on - strand, within DVU1104at 1210.027 kb on - strand, within DVU1104at 1210.051 kb on - strand, within DVU1104at 1210.236 kb on + strand, within DVU1104at 1210.294 kb on + strand, within DVU1104at 1210.294 kb on + strand, within DVU1104at 1210.299 kb on + strand, within DVU1104at 1210.325 kb on + strand, within DVU1104at 1210.470 kb on + strandat 1210.488 kb on - strandat 1210.526 kb on - strandat 1210.531 kb on - strandat 1210.552 kb on - strandat 1210.554 kb on - strandat 1210.622 kb on + strand, within DVU1105at 1210.632 kb on + strand, within DVU1105at 1210.637 kb on + strand, within DVU1105at 1210.654 kb on - strand, within DVU1105at 1210.659 kb on + strand, within DVU1105at 1210.699 kb on + strand, within DVU1105at 1210.702 kb on + strand, within DVU1105at 1210.710 kb on - strand, within DVU1105at 1210.741 kb on - strand, within DVU1105

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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1,208,364 - DVU1102 0.14 -1.0
1,208,364 - DVU1102 0.14 -2.2
1,208,414 + DVU1102 0.18 -0.0
1,208,417 - DVU1102 0.19 +0.1
1,208,446 + DVU1102 0.21 -0.5
1,208,466 + DVU1102 0.23 -0.3
1,208,466 + DVU1102 0.23 -0.2
1,208,466 + DVU1102 0.23 +0.1
1,208,474 - DVU1102 0.24 -0.5
1,208,516 - DVU1102 0.27 -0.0
1,208,525 - DVU1102 0.28 +0.4
1,208,558 - DVU1102 0.31 -1.2
1,208,567 + DVU1102 0.32 +0.8
1,208,582 - DVU1102 0.33 +0.6
1,208,592 + DVU1102 0.34 -0.1
1,208,648 - DVU1102 0.39 +0.0
1,208,648 - DVU1102 0.39 -0.1
1,208,648 - DVU1102 0.39 +0.5
1,208,653 - DVU1102 0.39 +0.0
1,208,669 - DVU1102 0.41 +0.1
1,208,721 + DVU1102 0.45 -0.1
1,208,736 + DVU1102 0.46 -0.3
1,208,740 + DVU1102 0.47 -1.3
1,208,814 - DVU1102 0.53 +0.3
1,208,904 + DVU1102 0.61 -0.1
1,208,904 + DVU1102 0.61 +0.5
1,208,910 + DVU1102 0.61 +0.1
1,208,912 - DVU1102 0.62 -0.0
1,208,920 + DVU1102 0.62 -0.0
1,208,920 + DVU1102 0.62 +0.0
1,208,925 + DVU1102 0.63 -1.0
1,208,925 + DVU1102 0.63 +1.9
1,208,959 + DVU1102 0.66 -0.3
1,209,031 + DVU1102 0.72 +0.0
1,209,071 + DVU1102 0.75 -0.0
1,209,087 - DVU1102 0.77 -1.6
1,209,113 + DVU1102 0.79 -0.8
1,209,125 - DVU1102 0.80 -0.5
1,209,139 + DVU1102 0.81 +0.2
1,209,148 + DVU1102 0.82 -0.1
1,209,287 + -0.7
1,209,315 + +0.3
1,209,315 + -1.0
1,209,334 + -1.1
1,209,342 - +0.0
1,209,357 + +0.1
1,209,365 - -0.4
1,209,400 + -0.8
1,209,414 - DVU1103 0.12 +0.8
1,209,474 - DVU1103 0.26 -0.2
1,209,566 - DVU1103 0.47 -0.0
1,209,568 - DVU1103 0.48 -0.2
1,209,625 - DVU1103 0.61 +0.4
1,209,627 + DVU1103 0.61 +0.0
1,209,627 + DVU1103 0.61 -0.5
1,209,640 + DVU1103 0.64 +0.3
1,209,648 + DVU1103 0.66 -0.0
1,209,771 + +0.2
1,209,779 - -0.4
1,209,779 - -0.0
1,209,950 + DVU1104 0.22 +0.1
1,209,958 - DVU1104 0.23 +0.5
1,210,027 - DVU1104 0.32 -0.4
1,210,051 - DVU1104 0.36 +0.1
1,210,236 + DVU1104 0.61 -0.1
1,210,294 + DVU1104 0.69 +0.8
1,210,294 + DVU1104 0.69 +0.5
1,210,299 + DVU1104 0.69 -0.7
1,210,325 + DVU1104 0.73 -0.7
1,210,470 + +1.4
1,210,488 - +0.2
1,210,526 - -0.2
1,210,531 - +0.2
1,210,552 - -0.1
1,210,554 - -0.7
1,210,622 + DVU1105 0.14 -0.4
1,210,632 + DVU1105 0.15 +1.1
1,210,637 + DVU1105 0.16 -0.5
1,210,654 - DVU1105 0.18 -0.5
1,210,659 + DVU1105 0.19 +0.0
1,210,699 + DVU1105 0.24 +0.2
1,210,702 + DVU1105 0.24 -0.5
1,210,710 - DVU1105 0.25 +1.0
1,210,741 - DVU1105 0.29 -0.6

Or see this region's nucleotide sequence