Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1102 and DVU1103 are separated by 4 nucleotides DVU1103 and DVU1104 overlap by 4 nucleotides DVU1104 and DVU1105 overlap by 14 nucleotides
DVU1102: DVU1102 - baseplate assembly protein, putative (TIGR), at 1,208,201 to 1,209,355
DVU1102
DVU1103: DVU1103 - baseplate assembly protein, putative (TIGR), at 1,209,360 to 1,209,794
DVU1103
DVU1104: DVU1104 - baseplate assembly protein, putative (TIGR), at 1,209,791 to 1,210,522
DVU1104
DVU1105: DVU1105 - hypothetical protein (TIGR), at 1,210,509 to 1,211,309
DVU1105
Position (kb)
1209
1210 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1208.364 kb on - strand, within DVU1102 at 1208.364 kb on - strand, within DVU1102 at 1208.414 kb on + strand, within DVU1102 at 1208.417 kb on - strand, within DVU1102 at 1208.446 kb on + strand, within DVU1102 at 1208.466 kb on + strand, within DVU1102 at 1208.466 kb on + strand, within DVU1102 at 1208.466 kb on + strand, within DVU1102 at 1208.474 kb on - strand, within DVU1102 at 1208.516 kb on - strand, within DVU1102 at 1208.525 kb on - strand, within DVU1102 at 1208.558 kb on - strand, within DVU1102 at 1208.567 kb on + strand, within DVU1102 at 1208.582 kb on - strand, within DVU1102 at 1208.592 kb on + strand, within DVU1102 at 1208.648 kb on - strand, within DVU1102 at 1208.648 kb on - strand, within DVU1102 at 1208.648 kb on - strand, within DVU1102 at 1208.653 kb on - strand, within DVU1102 at 1208.669 kb on - strand, within DVU1102 at 1208.721 kb on + strand, within DVU1102 at 1208.736 kb on + strand, within DVU1102 at 1208.740 kb on + strand, within DVU1102 at 1208.814 kb on - strand, within DVU1102 at 1208.904 kb on + strand, within DVU1102 at 1208.904 kb on + strand, within DVU1102 at 1208.910 kb on + strand, within DVU1102 at 1208.912 kb on - strand, within DVU1102 at 1208.920 kb on + strand, within DVU1102 at 1208.920 kb on + strand, within DVU1102 at 1208.925 kb on + strand, within DVU1102 at 1208.925 kb on + strand, within DVU1102 at 1208.959 kb on + strand, within DVU1102 at 1209.031 kb on + strand, within DVU1102 at 1209.071 kb on + strand, within DVU1102 at 1209.087 kb on - strand, within DVU1102 at 1209.113 kb on + strand, within DVU1102 at 1209.125 kb on - strand, within DVU1102 at 1209.139 kb on + strand, within DVU1102 at 1209.148 kb on + strand, within DVU1102 at 1209.287 kb on + strand at 1209.315 kb on + strand at 1209.315 kb on + strand at 1209.334 kb on + strand at 1209.342 kb on - strand at 1209.357 kb on + strand at 1209.365 kb on - strand at 1209.400 kb on + strand at 1209.414 kb on - strand, within DVU1103 at 1209.474 kb on - strand, within DVU1103 at 1209.566 kb on - strand, within DVU1103 at 1209.568 kb on - strand, within DVU1103 at 1209.625 kb on - strand, within DVU1103 at 1209.627 kb on + strand, within DVU1103 at 1209.627 kb on + strand, within DVU1103 at 1209.640 kb on + strand, within DVU1103 at 1209.648 kb on + strand, within DVU1103 at 1209.771 kb on + strand at 1209.779 kb on - strand at 1209.779 kb on - strand at 1209.950 kb on + strand, within DVU1104 at 1209.958 kb on - strand, within DVU1104 at 1210.027 kb on - strand, within DVU1104 at 1210.051 kb on - strand, within DVU1104 at 1210.236 kb on + strand, within DVU1104 at 1210.294 kb on + strand, within DVU1104 at 1210.294 kb on + strand, within DVU1104 at 1210.299 kb on + strand, within DVU1104 at 1210.325 kb on + strand, within DVU1104 at 1210.470 kb on + strand at 1210.488 kb on - strand at 1210.526 kb on - strand at 1210.531 kb on - strand at 1210.552 kb on - strand at 1210.554 kb on - strand at 1210.622 kb on + strand, within DVU1105 at 1210.632 kb on + strand, within DVU1105 at 1210.637 kb on + strand, within DVU1105 at 1210.654 kb on - strand, within DVU1105 at 1210.659 kb on + strand, within DVU1105 at 1210.699 kb on + strand, within DVU1105 at 1210.702 kb on + strand, within DVU1105 at 1210.710 kb on - strand, within DVU1105 at 1210.741 kb on - strand, within DVU1105
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 1,208,364 - DVU1102 0.14 -1.0 1,208,364 - DVU1102 0.14 -2.2 1,208,414 + DVU1102 0.18 -0.0 1,208,417 - DVU1102 0.19 +0.1 1,208,446 + DVU1102 0.21 -0.5 1,208,466 + DVU1102 0.23 -0.3 1,208,466 + DVU1102 0.23 -0.2 1,208,466 + DVU1102 0.23 +0.1 1,208,474 - DVU1102 0.24 -0.5 1,208,516 - DVU1102 0.27 -0.0 1,208,525 - DVU1102 0.28 +0.4 1,208,558 - DVU1102 0.31 -1.2 1,208,567 + DVU1102 0.32 +0.8 1,208,582 - DVU1102 0.33 +0.6 1,208,592 + DVU1102 0.34 -0.1 1,208,648 - DVU1102 0.39 +0.0 1,208,648 - DVU1102 0.39 -0.1 1,208,648 - DVU1102 0.39 +0.5 1,208,653 - DVU1102 0.39 +0.0 1,208,669 - DVU1102 0.41 +0.1 1,208,721 + DVU1102 0.45 -0.1 1,208,736 + DVU1102 0.46 -0.3 1,208,740 + DVU1102 0.47 -1.3 1,208,814 - DVU1102 0.53 +0.3 1,208,904 + DVU1102 0.61 -0.1 1,208,904 + DVU1102 0.61 +0.5 1,208,910 + DVU1102 0.61 +0.1 1,208,912 - DVU1102 0.62 -0.0 1,208,920 + DVU1102 0.62 -0.0 1,208,920 + DVU1102 0.62 +0.0 1,208,925 + DVU1102 0.63 -1.0 1,208,925 + DVU1102 0.63 +1.9 1,208,959 + DVU1102 0.66 -0.3 1,209,031 + DVU1102 0.72 +0.0 1,209,071 + DVU1102 0.75 -0.0 1,209,087 - DVU1102 0.77 -1.6 1,209,113 + DVU1102 0.79 -0.8 1,209,125 - DVU1102 0.80 -0.5 1,209,139 + DVU1102 0.81 +0.2 1,209,148 + DVU1102 0.82 -0.1 1,209,287 + -0.7 1,209,315 + +0.3 1,209,315 + -1.0 1,209,334 + -1.1 1,209,342 - +0.0 1,209,357 + +0.1 1,209,365 - -0.4 1,209,400 + -0.8 1,209,414 - DVU1103 0.12 +0.8 1,209,474 - DVU1103 0.26 -0.2 1,209,566 - DVU1103 0.47 -0.0 1,209,568 - DVU1103 0.48 -0.2 1,209,625 - DVU1103 0.61 +0.4 1,209,627 + DVU1103 0.61 +0.0 1,209,627 + DVU1103 0.61 -0.5 1,209,640 + DVU1103 0.64 +0.3 1,209,648 + DVU1103 0.66 -0.0 1,209,771 + +0.2 1,209,779 - -0.4 1,209,779 - -0.0 1,209,950 + DVU1104 0.22 +0.1 1,209,958 - DVU1104 0.23 +0.5 1,210,027 - DVU1104 0.32 -0.4 1,210,051 - DVU1104 0.36 +0.1 1,210,236 + DVU1104 0.61 -0.1 1,210,294 + DVU1104 0.69 +0.8 1,210,294 + DVU1104 0.69 +0.5 1,210,299 + DVU1104 0.69 -0.7 1,210,325 + DVU1104 0.73 -0.7 1,210,470 + +1.4 1,210,488 - +0.2 1,210,526 - -0.2 1,210,531 - +0.2 1,210,552 - -0.1 1,210,554 - -0.7 1,210,622 + DVU1105 0.14 -0.4 1,210,632 + DVU1105 0.15 +1.1 1,210,637 + DVU1105 0.16 -0.5 1,210,654 - DVU1105 0.18 -0.5 1,210,659 + DVU1105 0.19 +0.0 1,210,699 + DVU1105 0.24 +0.2 1,210,702 + DVU1105 0.24 -0.5 1,210,710 - DVU1105 0.25 +1.0 1,210,741 - DVU1105 0.29 -0.6
Or see this region's nucleotide sequence