Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysK and DVU0664 are separated by 127 nucleotides DVU0664 and DVU0665 overlap by 4 nucleotides DVU0665 and DVU0666 are separated by 96 nucleotides
DVU0663: cysK - cysteine synthase A (TIGR), at 734,395 to 735,321
cysK
DVU0664: DVU0664 - cysteine desulfurase (TIGR), at 735,449 to 736,633
DVU0664
DVU0665: DVU0665 - nitrogen fixation protein nifU (TIGR), at 736,630 to 737,475
DVU0665
DVU0666: DVU0666 - HD domain protein (TIGR), at 737,572 to 738,570
DVU0666
Position (kb) 735
736
737 Strain fitness (log2 ratio) -2
-1
0
1
2 at 735.316 kb on + strand at 735.336 kb on - strand at 735.341 kb on - strand at 735.355 kb on + strand at 735.369 kb on - strand at 735.383 kb on + strand at 735.383 kb on + strand at 735.506 kb on - strand at 735.618 kb on + strand, within DVU0664 at 735.618 kb on + strand, within DVU0664 at 735.725 kb on - strand, within DVU0664 at 735.848 kb on - strand, within DVU0664 at 735.901 kb on + strand, within DVU0664 at 735.923 kb on + strand, within DVU0664 at 736.076 kb on - strand, within DVU0664 at 736.112 kb on + strand, within DVU0664 at 736.374 kb on + strand, within DVU0664 at 736.438 kb on - strand, within DVU0664 at 736.452 kb on - strand, within DVU0664 at 736.541 kb on + strand at 736.572 kb on + strand at 736.582 kb on + strand at 736.587 kb on + strand at 736.665 kb on - strand at 736.746 kb on + strand, within DVU0665 at 736.754 kb on - strand, within DVU0665 at 736.974 kb on - strand, within DVU0665 at 737.095 kb on + strand, within DVU0665 at 737.130 kb on - strand, within DVU0665 at 737.148 kb on + strand, within DVU0665 at 737.246 kb on + strand, within DVU0665 at 737.246 kb on + strand, within DVU0665 at 737.254 kb on - strand, within DVU0665 at 737.254 kb on - strand, within DVU0665 at 737.265 kb on + strand, within DVU0665 at 737.311 kb on - strand, within DVU0665 at 737.399 kb on - strand at 737.506 kb on + strand at 737.524 kb on + strand at 737.535 kb on - strand at 737.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 735,316 + +0.7 735,336 - -0.2 735,341 - -1.3 735,355 + -0.7 735,369 - -0.4 735,383 + +1.9 735,383 + +1.0 735,506 - -0.8 735,618 + DVU0664 0.14 -0.5 735,618 + DVU0664 0.14 -1.6 735,725 - DVU0664 0.23 -0.9 735,848 - DVU0664 0.34 -0.6 735,901 + DVU0664 0.38 -1.0 735,923 + DVU0664 0.40 -0.4 736,076 - DVU0664 0.53 -0.9 736,112 + DVU0664 0.56 +2.5 736,374 + DVU0664 0.78 -0.6 736,438 - DVU0664 0.83 -1.0 736,452 - DVU0664 0.85 -0.9 736,541 + +0.4 736,572 + -1.2 736,582 + -0.6 736,587 + -0.0 736,665 - -0.8 736,746 + DVU0665 0.14 +0.8 736,754 - DVU0665 0.15 -2.3 736,974 - DVU0665 0.41 -0.4 737,095 + DVU0665 0.55 -0.6 737,130 - DVU0665 0.59 -0.5 737,148 + DVU0665 0.61 +0.4 737,246 + DVU0665 0.73 +0.5 737,246 + DVU0665 0.73 +0.1 737,254 - DVU0665 0.74 -1.4 737,254 - DVU0665 0.74 -0.3 737,265 + DVU0665 0.75 -0.9 737,311 - DVU0665 0.80 -0.4 737,399 - -0.3 737,506 + -0.0 737,524 + -1.7 737,535 - +0.9 737,617 - +0.4
Or see this region's nucleotide sequence