Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0099 and DORF807 overlap by 13 nucleotides DORF807 and flrC overlap by 4 nucleotides
DVUA0099: DVUA0099 - HAMP domain protein (TIGR), at 133,570 to 135,753
DVUA0099
DORF807: DORF807 - no description, at 135,741 to 136,115
DORF807
DVUA0100: flrC - sigma-54 dependent transcriptional regulator (TIGR), at 136,112 to 137,839
flrC
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.812 kb on + strand, within DVUA0099 at 134.820 kb on - strand, within DVUA0099 at 134.873 kb on - strand, within DVUA0099 at 134.873 kb on - strand, within DVUA0099 at 135.024 kb on - strand, within DVUA0099 at 135.051 kb on + strand, within DVUA0099 at 135.229 kb on + strand, within DVUA0099 at 135.341 kb on + strand, within DVUA0099 at 135.344 kb on - strand, within DVUA0099 at 135.351 kb on + strand, within DVUA0099 at 135.356 kb on + strand, within DVUA0099 at 135.500 kb on - strand, within DVUA0099 at 135.561 kb on + strand at 135.569 kb on - strand at 135.635 kb on + strand at 135.643 kb on - strand at 135.734 kb on + strand at 135.762 kb on - strand at 135.849 kb on - strand, within DORF807 at 135.924 kb on + strand, within DORF807 at 135.932 kb on - strand, within DORF807 at 135.998 kb on - strand, within DORF807 at 136.048 kb on - strand, within DORF807 at 136.064 kb on - strand, within DORF807 at 136.066 kb on + strand, within DORF807 at 136.092 kb on - strand at 136.092 kb on - strand at 136.110 kb on + strand at 136.368 kb on + strand, within flrC at 136.416 kb on + strand, within flrC at 136.437 kb on + strand, within flrC at 136.478 kb on - strand, within flrC at 136.540 kb on - strand, within flrC at 136.557 kb on + strand, within flrC at 136.633 kb on + strand, within flrC at 136.638 kb on - strand, within flrC at 136.638 kb on - strand, within flrC at 136.652 kb on - strand, within flrC at 136.674 kb on + strand, within flrC at 136.868 kb on + strand, within flrC at 136.912 kb on + strand, within flrC at 136.958 kb on - strand, within flrC at 137.015 kb on - strand, within flrC
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 134,812 + DVUA0099 0.57 -0.3 134,820 - DVUA0099 0.57 -1.1 134,873 - DVUA0099 0.60 +0.4 134,873 - DVUA0099 0.60 +0.3 135,024 - DVUA0099 0.67 -0.5 135,051 + DVUA0099 0.68 -0.2 135,229 + DVUA0099 0.76 -0.3 135,341 + DVUA0099 0.81 -0.3 135,344 - DVUA0099 0.81 -2.5 135,351 + DVUA0099 0.82 -0.6 135,356 + DVUA0099 0.82 -0.3 135,500 - DVUA0099 0.88 +0.6 135,561 + -1.2 135,569 - +0.1 135,635 + +0.1 135,643 - -0.8 135,734 + +0.2 135,762 - +0.0 135,849 - DORF807 0.29 +1.1 135,924 + DORF807 0.49 +0.1 135,932 - DORF807 0.51 -0.2 135,998 - DORF807 0.69 +1.8 136,048 - DORF807 0.82 +0.1 136,064 - DORF807 0.86 -0.0 136,066 + DORF807 0.87 +0.0 136,092 - -1.0 136,092 - +0.2 136,110 + -0.9 136,368 + flrC DVUA0100 0.15 -0.5 136,416 + flrC DVUA0100 0.18 -0.7 136,437 + flrC DVUA0100 0.19 +0.2 136,478 - flrC DVUA0100 0.21 +0.1 136,540 - flrC DVUA0100 0.25 +0.1 136,557 + flrC DVUA0100 0.26 +0.5 136,633 + flrC DVUA0100 0.30 -0.8 136,638 - flrC DVUA0100 0.30 -0.5 136,638 - flrC DVUA0100 0.30 -0.6 136,652 - flrC DVUA0100 0.31 -0.0 136,674 + flrC DVUA0100 0.33 -0.1 136,868 + flrC DVUA0100 0.44 +1.1 136,912 + flrC DVUA0100 0.46 -1.3 136,958 - flrC DVUA0100 0.49 +0.9 137,015 - flrC DVUA0100 0.52 +0.2
Or see this region's nucleotide sequence