Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF43274

Experiment: MoLS4 with L-Arginine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2689 and DVU2690 are separated by 2 nucleotidesDVU2690 and DORF43274 overlap by 8 nucleotidesDORF43274 and DVU2691 overlap by 49 nucleotidesDVU2691 and DVU2692 are separated by 9 nucleotidesDVU2692 and DVU2693 are separated by 85 nucleotides DVU2689: DVU2689 - bacteriophage DNA transposition B protein (TIGR), at 2,803,529 to 2,804,314 DVU2689 DVU2690: DVU2690 - hypothetical protein (TIGR), at 2,804,317 to 2,804,904 DVU2690 DORF43274: DORF43274 - no description, at 2,804,897 to 2,805,226 DORF43274 DVU2691: DVU2691 - hypothetical protein (TIGR), at 2,805,178 to 2,805,711 DVU2691 DVU2692: DVU2692 - conserved domain protein (TIGR), at 2,805,721 to 2,805,957 DVU2692 DVU2693: DVU2693 - hypothetical protein (TIGR), at 2,806,043 to 2,806,282 DVU2693 Position (kb) 2804 2805 2806Strain fitness (log2 ratio) -2 -1 0 1 2at 2803.901 kb on + strand, within DVU2689at 2803.930 kb on + strand, within DVU2689at 2803.939 kb on - strand, within DVU2689at 2803.960 kb on - strand, within DVU2689at 2804.008 kb on + strand, within DVU2689at 2804.036 kb on + strand, within DVU2689at 2804.036 kb on + strand, within DVU2689at 2804.036 kb on + strand, within DVU2689at 2804.044 kb on - strand, within DVU2689at 2804.062 kb on + strand, within DVU2689at 2804.142 kb on + strand, within DVU2689at 2804.144 kb on + strand, within DVU2689at 2804.158 kb on + strand, within DVU2689at 2804.238 kb on - strandat 2804.296 kb on + strandat 2804.296 kb on + strandat 2804.304 kb on - strandat 2804.475 kb on - strand, within DVU2690at 2804.483 kb on - strand, within DVU2690at 2804.495 kb on + strand, within DVU2690at 2804.570 kb on - strand, within DVU2690at 2804.637 kb on - strand, within DVU2690at 2804.675 kb on + strand, within DVU2690at 2804.675 kb on + strand, within DVU2690at 2804.676 kb on + strand, within DVU2690at 2804.683 kb on - strand, within DVU2690at 2804.683 kb on - strand, within DVU2690at 2804.759 kb on + strand, within DVU2690at 2804.765 kb on - strand, within DVU2690at 2804.821 kb on - strand, within DVU2690at 2804.825 kb on + strand, within DVU2690at 2804.879 kb on - strandat 2804.887 kb on - strandat 2804.893 kb on + strandat 2804.893 kb on + strandat 2804.893 kb on + strandat 2804.907 kb on + strandat 2805.015 kb on - strand, within DORF43274at 2805.015 kb on - strand, within DORF43274at 2805.061 kb on - strand, within DORF43274at 2805.114 kb on - strand, within DORF43274at 2805.123 kb on + strand, within DORF43274at 2805.191 kb on + strandat 2805.259 kb on + strand, within DVU2691at 2805.259 kb on + strand, within DVU2691at 2805.478 kb on + strand, within DVU2691at 2805.486 kb on - strand, within DVU2691at 2805.533 kb on - strand, within DVU2691at 2805.552 kb on - strand, within DVU2691at 2805.552 kb on - strand, within DVU2691at 2805.636 kb on + strand, within DVU2691at 2805.645 kb on - strand, within DVU2691at 2805.687 kb on - strandat 2805.687 kb on - strandat 2805.687 kb on - strandat 2805.743 kb on - strandat 2805.865 kb on + strand, within DVU2692at 2805.946 kb on - strandat 2806.015 kb on + strandat 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.155 kb on + strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693at 2806.163 kb on - strand, within DVU2693

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM
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2,803,901 + DVU2689 0.47 -1.3
2,803,930 + DVU2689 0.51 -1.1
2,803,939 - DVU2689 0.52 -0.6
2,803,960 - DVU2689 0.55 -0.2
2,804,008 + DVU2689 0.61 -0.3
2,804,036 + DVU2689 0.65 -2.5
2,804,036 + DVU2689 0.65 -0.5
2,804,036 + DVU2689 0.65 -1.0
2,804,044 - DVU2689 0.66 -0.9
2,804,062 + DVU2689 0.68 -0.3
2,804,142 + DVU2689 0.78 -0.4
2,804,144 + DVU2689 0.78 +2.2
2,804,158 + DVU2689 0.80 -0.4
2,804,238 - +0.1
2,804,296 + +0.1
2,804,296 + -1.2
2,804,304 - -0.8
2,804,475 - DVU2690 0.27 -1.1
2,804,483 - DVU2690 0.28 -0.2
2,804,495 + DVU2690 0.30 -0.4
2,804,570 - DVU2690 0.43 -0.1
2,804,637 - DVU2690 0.54 -0.3
2,804,675 + DVU2690 0.61 -0.0
2,804,675 + DVU2690 0.61 -0.5
2,804,676 + DVU2690 0.61 +1.1
2,804,683 - DVU2690 0.62 +0.1
2,804,683 - DVU2690 0.62 -0.5
2,804,759 + DVU2690 0.75 -0.4
2,804,765 - DVU2690 0.76 -0.1
2,804,821 - DVU2690 0.86 -0.1
2,804,825 + DVU2690 0.86 -0.3
2,804,879 - +0.1
2,804,887 - -0.2
2,804,893 + -1.1
2,804,893 + -1.1
2,804,893 + -0.7
2,804,907 + +1.5
2,805,015 - DORF43274 0.36 -0.1
2,805,015 - DORF43274 0.36 -0.0
2,805,061 - DORF43274 0.50 -0.1
2,805,114 - DORF43274 0.66 -0.0
2,805,123 + DORF43274 0.68 +1.5
2,805,191 + -0.3
2,805,259 + DVU2691 0.15 -1.4
2,805,259 + DVU2691 0.15 +0.7
2,805,478 + DVU2691 0.56 -0.1
2,805,486 - DVU2691 0.58 -0.2
2,805,533 - DVU2691 0.66 -1.1
2,805,552 - DVU2691 0.70 +0.0
2,805,552 - DVU2691 0.70 +0.0
2,805,636 + DVU2691 0.86 +0.0
2,805,645 - DVU2691 0.87 -1.1
2,805,687 - +0.0
2,805,687 - +0.2
2,805,687 - -0.3
2,805,743 - +0.3
2,805,865 + DVU2692 0.61 +0.1
2,805,946 - +1.7
2,806,015 + -0.4
2,806,155 + DVU2693 0.47 -0.0
2,806,155 + DVU2693 0.47 +0.7
2,806,155 + DVU2693 0.47 +0.1
2,806,155 + DVU2693 0.47 -0.2
2,806,155 + DVU2693 0.47 -0.2
2,806,155 + DVU2693 0.47 +0.4
2,806,163 - DVU2693 0.50 +0.5
2,806,163 - DVU2693 0.50 -0.1
2,806,163 - DVU2693 0.50 -0.5
2,806,163 - DVU2693 0.50 -1.5

Or see this region's nucleotide sequence