Experiment: MoLS4 with L-Arginine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt merP and DVU2326 are separated by 96 nucleotides DVU2326 and DORF17147 overlap by 1 nucleotides DORF17147 and hypA are separated by 273 nucleotides hypA and hypB are separated by 10 nucleotides
DVU2325: merP - mercuric transport protein periplasmic component (TIGR), at 2,422,628 to 2,422,825
merP
DVU2326: DVU2326 - conserved domain protein (TIGR), at 2,422,922 to 2,423,824
DVU2326
DORF17147: DORF17147 - SEED: TPR domain protein, at 2,423,824 to 2,424,540
DORF17147
DVU2328: hypA - hydrogenase nickel insertion protein HypA, putative (TIGR), at 2,424,814 to 2,425,167
hypA
DVU2329: hypB - hydrogenase accessory protein HypB (TIGR), at 2,425,178 to 2,425,852
hypB
Position (kb)
2423
2424
2425 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2422.914 kb on + strand at 2423.022 kb on - strand, within DVU2326 at 2423.045 kb on - strand, within DVU2326 at 2423.133 kb on + strand, within DVU2326 at 2423.141 kb on - strand, within DVU2326 at 2423.141 kb on - strand, within DVU2326 at 2423.157 kb on + strand, within DVU2326 at 2423.247 kb on + strand, within DVU2326 at 2423.334 kb on - strand, within DVU2326 at 2423.385 kb on + strand, within DVU2326 at 2423.387 kb on + strand, within DVU2326 at 2423.388 kb on - strand, within DVU2326 at 2423.393 kb on - strand, within DVU2326 at 2423.422 kb on + strand, within DVU2326 at 2423.435 kb on + strand, within DVU2326 at 2423.512 kb on + strand, within DVU2326 at 2423.544 kb on - strand, within DVU2326 at 2423.569 kb on - strand, within DVU2326 at 2423.783 kb on + strand at 2423.791 kb on - strand at 2423.960 kb on - strand, within DORF17147 at 2424.014 kb on + strand, within DORF17147 at 2424.080 kb on + strand, within DORF17147 at 2424.145 kb on + strand, within DORF17147 at 2424.320 kb on - strand, within DORF17147 at 2424.389 kb on + strand, within DORF17147 at 2424.402 kb on - strand, within DORF17147 at 2424.411 kb on + strand, within DORF17147 at 2424.437 kb on + strand, within DORF17147 at 2424.449 kb on + strand, within DORF17147 at 2424.464 kb on + strand, within DORF17147 at 2424.464 kb on + strand, within DORF17147 at 2424.473 kb on + strand at 2424.511 kb on - strand at 2424.558 kb on + strand at 2424.566 kb on + strand at 2424.612 kb on + strand at 2424.620 kb on - strand at 2424.720 kb on + strand at 2424.748 kb on + strand at 2424.785 kb on + strand at 2424.817 kb on + strand at 2424.840 kb on - strand at 2424.953 kb on + strand, within hypA at 2425.004 kb on - strand, within hypA at 2425.064 kb on + strand, within hypA at 2425.123 kb on + strand, within hypA at 2425.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Arginine as nutrient 10mM remove 2,422,914 + +0.1 2,423,022 - DVU2326 0.11 -1.0 2,423,045 - DVU2326 0.14 -0.2 2,423,133 + DVU2326 0.23 -1.8 2,423,141 - DVU2326 0.24 -0.1 2,423,141 - DVU2326 0.24 +0.1 2,423,157 + DVU2326 0.26 +0.1 2,423,247 + DVU2326 0.36 +0.2 2,423,334 - DVU2326 0.46 +0.1 2,423,385 + DVU2326 0.51 -0.0 2,423,387 + DVU2326 0.51 -1.0 2,423,388 - DVU2326 0.52 +0.1 2,423,393 - DVU2326 0.52 +1.1 2,423,422 + DVU2326 0.55 -1.1 2,423,435 + DVU2326 0.57 +0.1 2,423,512 + DVU2326 0.65 +0.3 2,423,544 - DVU2326 0.69 -0.9 2,423,569 - DVU2326 0.72 +0.0 2,423,783 + -0.1 2,423,791 - +0.1 2,423,960 - DORF17147 0.19 -1.3 2,424,014 + DORF17147 0.26 +0.3 2,424,080 + DORF17147 0.36 -0.1 2,424,145 + DORF17147 0.45 -0.1 2,424,320 - DORF17147 0.69 +0.6 2,424,389 + DORF17147 0.79 -0.6 2,424,402 - DORF17147 0.81 +3.1 2,424,411 + DORF17147 0.82 +0.9 2,424,437 + DORF17147 0.85 +0.3 2,424,449 + DORF17147 0.87 +0.5 2,424,464 + DORF17147 0.89 -0.8 2,424,464 + DORF17147 0.89 +0.5 2,424,473 + +0.2 2,424,511 - -1.0 2,424,558 + -0.8 2,424,566 + -0.1 2,424,612 + -0.5 2,424,620 - -2.9 2,424,720 + -1.0 2,424,748 + +0.6 2,424,785 + -0.1 2,424,817 + -2.2 2,424,840 - +0.2 2,424,953 + hypA DVU2328 0.39 +0.2 2,425,004 - hypA DVU2328 0.54 -0.6 2,425,064 + hypA DVU2328 0.71 +0.2 2,425,123 + hypA DVU2328 0.87 -1.4 2,425,152 + +0.9
Or see this region's nucleotide sequence