Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16335

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse3; day3
1,411,868	+		BBR_RS16330	0.36	+7.9
1,411,868	+		BBR_RS16330	0.36	+8.2
1,411,904	+		BBR_RS16330	0.40	+7.7
1,411,930	+		BBR_RS16330	0.42	+7.9
1,411,953	-		BBR_RS16330	0.44	+7.8
1,411,953	-		BBR_RS16330	0.44	+7.7
1,411,982	+		BBR_RS16330	0.47	+7.6
1,412,064	+		BBR_RS16330	0.54	+7.7
1,412,082	+		BBR_RS16330	0.56	+7.9
1,412,128	+		BBR_RS16330	0.60	+7.5
1,412,137	+		BBR_RS16330	0.61	+7.8
1,412,137	+		BBR_RS16330	0.61	+7.4
1,412,145	-		BBR_RS16330	0.61	+8.1
1,412,154	+		BBR_RS16330	0.62	+8.3
1,412,162	-		BBR_RS16330	0.63	+7.4
1,412,188	+		BBR_RS16330	0.65	+7.8
1,412,196	-		BBR_RS16330	0.66	+7.9
1,412,205	+		BBR_RS16330	0.67	+7.9
1,412,224	-		BBR_RS16330	0.68	+10.8
1,412,251	+		BBR_RS16330	0.71	+8.3
1,412,283	-		BBR_RS16330	0.74	+7.2
1,412,307	-		BBR_RS16330	0.76	+7.7
1,412,317	+		BBR_RS16330	0.77	+7.4
1,412,354	+		BBR_RS16330	0.80	+7.6
1,412,382	-		BBR_RS16330	0.83	+8.9
1,412,431	+		BBR_RS16330	0.87	+8.5
1,412,449	+		BBR_RS16330	0.89	+8.1
1,412,449	+		BBR_RS16330	0.89	+8.1
1,412,456	+		BBR_RS16330	0.89	+8.7
1,412,466	-				+11.1
1,412,503	+				+8.1
1,412,505	-				+7.9
1,412,538	+				+7.7
1,412,595	+				-0.6
1,412,667	-				+5.6
1,412,705	-				+3.1
1,412,710	-				+1.4
1,412,762	+				-3.0
1,412,847	-				+0.1
1,412,923	+				+0.4
1,412,925	+				-0.3
1,412,989	-				+0.1
1,413,051	+				+0.8
1,413,070	-				+0.2
1,413,070	-				-0.1
1,413,107	-				+0.6
1,413,179	+		BBR_RS16335	0.11	+1.2
1,413,229	+		BBR_RS16335	0.13	-0.6
1,413,265	+		BBR_RS16335	0.14	+0.3
1,413,265	+		BBR_RS16335	0.14	+0.9
1,413,270	+		BBR_RS16335	0.14	-0.3
1,413,270	+		BBR_RS16335	0.14	-1.8
1,413,270	+		BBR_RS16335	0.14	-1.2
1,413,272	+		BBR_RS16335	0.15	+2.2
1,413,278	-		BBR_RS16335	0.15	+0.1
1,413,278	-		BBR_RS16335	0.15	+0.5
1,413,280	+		BBR_RS16335	0.15	-0.6
1,413,280	+		BBR_RS16335	0.15	+0.3
1,413,286	-		BBR_RS16335	0.15	+2.5
1,413,288	-		BBR_RS16335	0.15	+0.9
1,413,293	+		BBR_RS16335	0.15	-2.1
1,413,316	-		BBR_RS16335	0.16	-1.2
1,413,358	+		BBR_RS16335	0.18	+1.4
1,413,384	+		BBR_RS16335	0.19	+0.7
1,413,432	+		BBR_RS16335	0.20	+0.7
1,413,448	-		BBR_RS16335	0.21	+0.1
1,413,530	-		BBR_RS16335	0.24	-1.7
1,413,603	+		BBR_RS16335	0.26	+0.7
1,413,621	-		BBR_RS16335	0.27	+0.8
1,413,646	+		BBR_RS16335	0.28	+1.3
1,413,659	+		BBR_RS16335	0.28	+0.2
1,413,731	-		BBR_RS16335	0.31	+0.0
1,413,796	+		BBR_RS16335	0.33	-0.0
1,413,869	+		BBR_RS16335	0.36	-1.6
1,413,900	-		BBR_RS16335	0.37	+2.0
1,413,908	-		BBR_RS16335	0.37	+1.0
1,413,934	-		BBR_RS16335	0.38	+2.6
1,413,942	-		BBR_RS16335	0.39	-2.0
1,413,956	-		BBR_RS16335	0.39	-1.5
1,413,962	-		BBR_RS16335	0.39	+2.2
1,414,011	-		BBR_RS16335	0.41	+1.2
1,414,062	+		BBR_RS16335	0.43	+1.5
1,414,070	-		BBR_RS16335	0.43	-1.7
1,414,070	-		BBR_RS16335	0.43	-2.0
1,414,072	+		BBR_RS16335	0.43	-1.2
1,414,072	+		BBR_RS16335	0.43	-0.6
1,414,080	-		BBR_RS16335	0.44	+0.2
1,414,080	-		BBR_RS16335	0.44	+3.2
1,414,140	-		BBR_RS16335	0.46	+0.2
1,414,160	-		BBR_RS16335	0.46	+0.6
1,414,182	-		BBR_RS16335	0.47	-1.6
1,414,218	-		BBR_RS16335	0.48	-0.2
1,414,224	+		BBR_RS16335	0.49	-1.1
1,414,251	-		BBR_RS16335	0.50	+0.0
1,414,317	+		BBR_RS16335	0.52	+0.7
1,414,404	+		BBR_RS16335	0.55	-0.3
1,414,471	+		BBR_RS16335	0.58	-1.6
1,414,483	+		BBR_RS16335	0.58	-3.2
1,414,502	+		BBR_RS16335	0.59	-2.1
1,414,510	-		BBR_RS16335	0.59	-0.5
1,414,553	+		BBR_RS16335	0.61	+0.0
1,414,567	+		BBR_RS16335	0.61	+0.6
1,414,567	+		BBR_RS16335	0.61	-0.7
1,414,567	+		BBR_RS16335	0.61	-1.2
1,414,572	+		BBR_RS16335	0.61	-1.3
1,414,572	+		BBR_RS16335	0.61	-0.5
1,414,586	+		BBR_RS16335	0.62	-1.3
1,414,624	+		BBR_RS16335	0.63	+2.5
1,414,666	-		BBR_RS16335	0.65	-1.6
1,414,678	+		BBR_RS16335	0.65	-1.9
1,414,850	-		BBR_RS16335	0.71	+1.3
1,414,903	-		BBR_RS16335	0.73	-0.0
1,414,986	-		BBR_RS16335	0.76	+1.0
1,415,127	+		BBR_RS16335	0.81	-0.5
1,415,127	+		BBR_RS16335	0.81	-1.1
1,415,127	+		BBR_RS16335	0.81	+1.0
1,415,134	+		BBR_RS16335	0.81	+1.0
1,415,135	-		BBR_RS16335	0.81	-1.8
1,415,139	+		BBR_RS16335	0.82	+1.4
1,415,147	-		BBR_RS16335	0.82	+1.1
1,415,147	-		BBR_RS16335	0.82	-1.6
1,415,155	+		BBR_RS16335	0.82	-1.8
1,415,165	+		BBR_RS16335	0.83	+1.8
1,415,180	+		BBR_RS16335	0.83	-1.6
1,415,180	+		BBR_RS16335	0.83	+0.4
1,415,188	-		BBR_RS16335	0.83	-2.2
1,415,188	-		BBR_RS16335	0.83	+1.0
1,415,188	-		BBR_RS16335	0.83	+1.6
1,415,198	+		BBR_RS16335	0.84	+1.0
1,415,213	-		BBR_RS16335	0.84	+1.5
1,415,231	+		BBR_RS16335	0.85	+1.8
1,415,283	+		BBR_RS16335	0.87	-0.3
1,415,288	+		BBR_RS16335	0.87	-1.4
1,415,291	-		BBR_RS16335	0.87	+0.7
1,415,291	-		BBR_RS16335	0.87	+1.2
1,415,305	-		BBR_RS16335	0.88	-0.1
1,415,327	-		BBR_RS16335	0.88	-0.0
1,415,350	-		BBR_RS16335	0.89	+0.4
1,415,365	+		BBR_RS16335	0.90	+0.1
1,415,398	+				+0.7
1,415,398	+				-2.2
1,415,408	+				-1.9
1,415,440	+				+1.6
1,415,490	-				-1.0
1,415,492	+				-1.3
1,415,492	+				+0.8
1,415,567	+				+2.8
1,415,700	-				+2.1
1,415,705	-				-1.2
1,415,707	+				+1.9
1,415,715	-				-0.2
1,415,721	-				+1.6
1,415,730	-				-0.5
1,415,732	-				+0.9
1,415,735	-				-1.3
1,415,738	+				-1.1
1,415,746	+				-0.9
1,415,746	+				-2.4
1,415,769	-				+0.0
1,415,795	+				+0.1
1,415,803	+				+1.5
1,415,867	-				+0.2
1,415,915	-				+0.3
1,415,915	-				-2.6
1,415,935	-				-1.2
1,415,946	+				+0.5
1,415,977	-				+0.7
1,416,004	+		BBR_RS16340	0.11	+0.1
1,416,019	+		BBR_RS16340	0.12	-0.2
1,416,031	+		BBR_RS16340	0.12	+0.5
1,416,031	+		BBR_RS16340	0.12	+1.0
1,416,093	-		BBR_RS16340	0.15	-0.0
1,416,122	-		BBR_RS16340	0.16	+1.2
1,416,132	-		BBR_RS16340	0.16	-3.6
1,416,132	-		BBR_RS16340	0.16	+0.9
1,416,149	-		BBR_RS16340	0.17	+0.3
1,416,335	-		BBR_RS16340	0.24	+0.5
1,416,335	-		BBR_RS16340	0.24	+1.4
1,416,352	+		BBR_RS16340	0.25	-0.2
1,416,406	-		BBR_RS16340	0.27	+0.2
1,416,427	+		BBR_RS16340	0.28	-2.3
1,416,441	-		BBR_RS16340	0.29	+0.6
1,416,631	+		BBR_RS16340	0.36	-0.1