Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS14270 and BBR_RS14275 are separated by 249 nucleotides BBR_RS14275 and BBR_RS14280 are separated by 147 nucleotides BBR_RS14280 and BBR_RS14285 are separated by 165 nucleotides
BBR_RS14270: BBR_RS14270 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 975,881 to 976,759
_RS14270
BBR_RS14275: BBR_RS14275 - 30S ribosomal protein S1, at 977,009 to 978,484
_RS14275
BBR_RS14280: BBR_RS14280 - dephospho-CoA kinase, at 978,632 to 979,258
_RS14280
BBR_RS14285: BBR_RS14285 - excinuclease ABC subunit UvrB, at 979,424 to 981,535
_RS14285
Position (kb) 977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 976.749 kb on + strand at 976.757 kb on - strand at 976.766 kb on + strand at 976.791 kb on + strand at 976.813 kb on + strand at 976.848 kb on + strand at 977.969 kb on + strand, within BBR_RS14275 at 978.593 kb on - strand at 978.626 kb on - strand at 979.109 kb on + strand, within BBR_RS14280 at 979.169 kb on + strand, within BBR_RS14280 at 979.234 kb on + strand at 979.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse3; day3 remove 976,749 + -0.0 976,757 - +0.4 976,766 + -3.7 976,791 + +0.9 976,813 + +1.0 976,848 + +1.8 977,969 + BBR_RS14275 0.65 -2.9 978,593 - -1.4 978,626 - -2.0 979,109 + BBR_RS14280 0.76 -0.0 979,169 + BBR_RS14280 0.86 +1.0 979,234 + +0.7 979,453 + +1.3
Or see this region's nucleotide sequence