Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS13825 and BBR_RS13830 are separated by 303 nucleotides BBR_RS13830 and BBR_RS13835 are separated by 64 nucleotides
BBR_RS13825: BBR_RS13825 - type I glutamate--ammonia ligase, at 879,611 to 881,047
_RS13825
BBR_RS13830: BBR_RS13830 - DUF4191 domain-containing protein, at 881,351 to 882,133
_RS13830
BBR_RS13835: BBR_RS13835 - FAD-dependent oxidoreductase, at 882,198 to 883,691
_RS13835
Position (kb) 881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 881.078 kb on - strand at 881.220 kb on - strand at 881.220 kb on - strand at 881.245 kb on - strand at 881.277 kb on - strand at 881.284 kb on + strand at 881.401 kb on - strand at 881.435 kb on - strand, within BBR_RS13830 at 882.113 kb on - strand at 882.256 kb on - strand at 882.279 kb on - strand at 882.279 kb on - strand at 882.380 kb on + strand, within BBR_RS13835 at 882.388 kb on + strand, within BBR_RS13835 at 882.388 kb on - strand, within BBR_RS13835 at 882.460 kb on - strand, within BBR_RS13835 at 882.461 kb on - strand, within BBR_RS13835 at 882.549 kb on + strand, within BBR_RS13835 at 882.549 kb on + strand, within BBR_RS13835 at 882.561 kb on + strand, within BBR_RS13835 at 882.575 kb on + strand, within BBR_RS13835 at 882.642 kb on - strand, within BBR_RS13835 at 882.662 kb on + strand, within BBR_RS13835 at 882.667 kb on - strand, within BBR_RS13835 at 882.673 kb on - strand, within BBR_RS13835 at 882.673 kb on - strand, within BBR_RS13835 at 882.766 kb on + strand, within BBR_RS13835 at 882.769 kb on + strand, within BBR_RS13835 at 882.769 kb on + strand, within BBR_RS13835 at 882.774 kb on - strand, within BBR_RS13835 at 882.840 kb on + strand, within BBR_RS13835 at 882.840 kb on + strand, within BBR_RS13835 at 882.848 kb on - strand, within BBR_RS13835 at 882.848 kb on - strand, within BBR_RS13835 at 882.868 kb on + strand, within BBR_RS13835 at 882.899 kb on - strand, within BBR_RS13835 at 882.899 kb on - strand, within BBR_RS13835 at 882.951 kb on + strand, within BBR_RS13835 at 882.985 kb on - strand, within BBR_RS13835 at 883.014 kb on + strand, within BBR_RS13835 at 883.088 kb on - strand, within BBR_RS13835
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse3; day3 remove 881,078 - -1.4 881,220 - -1.2 881,220 - +0.5 881,245 - -0.4 881,277 - -1.0 881,284 + -0.3 881,401 - -0.1 881,435 - BBR_RS13830 0.11 -1.8 882,113 - -0.9 882,256 - +0.6 882,279 - +1.9 882,279 - +1.3 882,380 + BBR_RS13835 0.12 -0.3 882,388 + BBR_RS13835 0.13 +1.5 882,388 - BBR_RS13835 0.13 -0.7 882,460 - BBR_RS13835 0.18 -0.3 882,461 - BBR_RS13835 0.18 -2.8 882,549 + BBR_RS13835 0.23 -0.6 882,549 + BBR_RS13835 0.23 +0.8 882,561 + BBR_RS13835 0.24 +1.0 882,575 + BBR_RS13835 0.25 -0.6 882,642 - BBR_RS13835 0.30 -0.5 882,662 + BBR_RS13835 0.31 +0.2 882,667 - BBR_RS13835 0.31 -0.6 882,673 - BBR_RS13835 0.32 +0.0 882,673 - BBR_RS13835 0.32 -2.1 882,766 + BBR_RS13835 0.38 +1.7 882,769 + BBR_RS13835 0.38 +1.8 882,769 + BBR_RS13835 0.38 +1.9 882,774 - BBR_RS13835 0.39 +0.0 882,840 + BBR_RS13835 0.43 +0.8 882,840 + BBR_RS13835 0.43 +2.6 882,848 - BBR_RS13835 0.44 -0.1 882,848 - BBR_RS13835 0.44 +1.2 882,868 + BBR_RS13835 0.45 +2.3 882,899 - BBR_RS13835 0.47 -0.3 882,899 - BBR_RS13835 0.47 +1.1 882,951 + BBR_RS13835 0.50 -0.6 882,985 - BBR_RS13835 0.53 +0.7 883,014 + BBR_RS13835 0.55 -0.2 883,088 - BBR_RS13835 0.60 +0.9
Or see this region's nucleotide sequence