Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS10590

Experiment: diet=StandardDiet; sample=FecalPellet; mouse3; day3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse3; day3
92,142	-				-2.9
92,151	-				-2.7
92,169	-				-2.7
92,174	-				+1.3
92,184	+				-1.3
92,192	-				-2.0
92,198	+				-3.3
92,198	+				-2.9
92,198	+				-3.0
92,206	-				-1.5
92,206	-				-3.4
92,206	-				-1.3
92,215	+				+0.6
92,215	+				-2.7
92,223	-				-2.4
92,234	+				-1.8
92,234	+				+0.0
92,242	-				+0.2
92,249	-				+1.1
92,290	+				+0.5
92,290	+				-1.2
92,290	+				+0.8
92,290	+				-1.4
92,290	+				-1.8
92,298	-				-0.5
92,298	-				+2.1
92,298	-				+1.4
92,314	+				+1.6
92,314	+				-0.9
92,316	+				-0.5
92,322	-				+3.0
92,334	+				+0.3
93,001	-				-0.4
93,027	-				+0.9
93,029	-				-3.1
93,031	-				+2.9
93,033	+				-0.9
93,033	+				+0.2
93,033	+				+0.7
93,033	+				+0.1
93,033	+				-1.5
93,033	+				+0.5
93,035	+				-0.1
93,041	-				-1.0
93,041	-				-1.2
93,041	-				-0.5
93,041	-				-1.5
93,041	-				-2.9
93,041	-				-0.6
93,045	+				-1.4
93,048	-				+1.7
93,048	-				+1.0
93,053	+				-0.3
93,074	+				+0.7
93,074	+				-0.9
93,074	+				+0.7
93,082	-				+0.1
93,108	-				+2.0
93,109	-				+1.7
93,109	-				-0.8
93,113	+				+0.3
93,134	-				-1.2
93,136	+				+0.8
93,142	+				-0.7
93,146	+				+1.9
93,146	+				-0.4
93,147	+				-0.2
93,147	+				+0.6
93,155	-				+0.8
93,171	-				-1.4
93,211	+		BBR_RS10590	0.13	+1.4
93,211	+		BBR_RS10590	0.13	+0.2
93,216	+		BBR_RS10590	0.13	+1.2
93,221	+		BBR_RS10590	0.13	+0.3
93,224	-		BBR_RS10590	0.14	-1.4
93,224	-		BBR_RS10590	0.14	-1.7
93,224	-		BBR_RS10590	0.14	-2.3
93,229	+		BBR_RS10590	0.14	+0.1
93,237	+		BBR_RS10590	0.15	+0.5
93,239	+		BBR_RS10590	0.15	+0.5
93,247	-		BBR_RS10590	0.16	+1.2
93,252	+		BBR_RS10590	0.16	+3.0
93,269	+		BBR_RS10590	0.17	-2.7
93,269	+		BBR_RS10590	0.17	-1.0
93,284	+		BBR_RS10590	0.19	+1.8
93,285	+		BBR_RS10590	0.19	+0.2
93,285	+		BBR_RS10590	0.19	+1.1
93,287	+		BBR_RS10590	0.19	+0.8
93,287	+		BBR_RS10590	0.19	+1.6
93,292	-		BBR_RS10590	0.19	-0.0
93,296	-		BBR_RS10590	0.20	+1.0
93,305	+		BBR_RS10590	0.20	+2.1
93,315	+		BBR_RS10590	0.21	-0.2
93,320	+		BBR_RS10590	0.22	+1.5
93,320	+		BBR_RS10590	0.22	-1.4
93,323	-		BBR_RS10590	0.22	+0.0
93,328	-		BBR_RS10590	0.22	+0.2
93,328	-		BBR_RS10590	0.22	-0.1
93,346	+		BBR_RS10590	0.24	+0.7
93,346	+		BBR_RS10590	0.24	+1.6
93,349	-		BBR_RS10590	0.24	+0.7
93,354	-		BBR_RS10590	0.24	+2.2
93,354	-		BBR_RS10590	0.24	+0.5
93,354	-		BBR_RS10590	0.24	+0.7
93,379	+		BBR_RS10590	0.26	-0.1
93,406	+		BBR_RS10590	0.29	+1.1
93,406	+		BBR_RS10590	0.29	+1.2
93,418	-		BBR_RS10590	0.30	+1.5
93,445	+		BBR_RS10590	0.32	+2.4
93,450	+		BBR_RS10590	0.32	-0.9
93,452	+		BBR_RS10590	0.33	+1.2
93,452	+		BBR_RS10590	0.33	+0.7
93,452	+		BBR_RS10590	0.33	+1.5
93,452	+		BBR_RS10590	0.33	+2.1
93,452	+		BBR_RS10590	0.33	+1.7
93,452	+		BBR_RS10590	0.33	+0.4
93,452	+		BBR_RS10590	0.33	-0.7
93,452	+		BBR_RS10590	0.33	+0.3
93,452	+		BBR_RS10590	0.33	+1.0
93,452	+		BBR_RS10590	0.33	-0.1
93,452	+		BBR_RS10590	0.33	+1.6
93,452	+		BBR_RS10590	0.33	+1.2
93,452	+		BBR_RS10590	0.33	+2.7
93,452	+		BBR_RS10590	0.33	+1.0
93,452	+		BBR_RS10590	0.33	+0.5
93,452	+		BBR_RS10590	0.33	+1.1
93,452	+		BBR_RS10590	0.33	+2.3
93,453	+		BBR_RS10590	0.33	-1.1
93,460	-		BBR_RS10590	0.33	+1.9
93,460	-		BBR_RS10590	0.33	+0.9
93,460	-		BBR_RS10590	0.33	+1.2
93,460	-		BBR_RS10590	0.33	+0.5
93,460	-		BBR_RS10590	0.33	-0.5
93,460	-		BBR_RS10590	0.33	-0.3
93,460	-		BBR_RS10590	0.33	+1.5
93,460	-		BBR_RS10590	0.33	+0.5
93,460	-		BBR_RS10590	0.33	+1.1
93,460	-		BBR_RS10590	0.33	+2.1
93,460	-		BBR_RS10590	0.33	-1.8
93,460	-		BBR_RS10590	0.33	+0.9
93,460	-		BBR_RS10590	0.33	+1.3
93,460	-		BBR_RS10590	0.33	-2.5
93,460	-		BBR_RS10590	0.33	+1.2
93,460	-		BBR_RS10590	0.33	+1.7
93,460	-		BBR_RS10590	0.33	-0.3
93,460	-		BBR_RS10590	0.33	+0.6
93,460	-		BBR_RS10590	0.33	-0.7
93,460	-		BBR_RS10590	0.33	+1.2
93,460	-		BBR_RS10590	0.33	+0.4
93,461	-		BBR_RS10590	0.33	+0.7
93,461	-		BBR_RS10590	0.33	+0.6
93,485	+		BBR_RS10590	0.35	+0.6
93,485	-		BBR_RS10590	0.35	-0.9
93,488	+		BBR_RS10590	0.35	+0.8
93,506	-		BBR_RS10590	0.37	-0.5
93,508	+		BBR_RS10590	0.37	+1.7
93,518	+		BBR_RS10590	0.38	+1.2
93,529	-		BBR_RS10590	0.39	+1.2
93,531	+		BBR_RS10590	0.39	+0.8
93,531	+		BBR_RS10590	0.39	+0.8
93,532	+		BBR_RS10590	0.39	+2.5
93,532	+		BBR_RS10590	0.39	+1.7
93,532	+		BBR_RS10590	0.39	-0.9
93,532	+		BBR_RS10590	0.39	-3.0
93,540	-		BBR_RS10590	0.40	+0.4
93,540	-		BBR_RS10590	0.40	-1.0
93,540	-		BBR_RS10590	0.40	+2.1
93,540	-		BBR_RS10590	0.40	+0.5
93,540	-		BBR_RS10590	0.40	-0.4
93,540	-		BBR_RS10590	0.40	+1.7
93,540	-		BBR_RS10590	0.40	+0.7
93,542	+		BBR_RS10590	0.40	-0.3
93,544	+		BBR_RS10590	0.40	+0.3
93,551	-		BBR_RS10590	0.41	-1.8
93,552	-		BBR_RS10590	0.41	+1.4
93,567	-		BBR_RS10590	0.42	+1.0
93,569	+		BBR_RS10590	0.42	+1.0
93,629	+		BBR_RS10590	0.47	-0.1
93,638	+		BBR_RS10590	0.48	+0.2
93,654	+		BBR_RS10590	0.49	+0.6
93,664	+		BBR_RS10590	0.50	-1.1
93,672	-		BBR_RS10590	0.51	-0.8
93,672	-		BBR_RS10590	0.51	+2.6
93,682	+		BBR_RS10590	0.52	-2.7
93,689	+		BBR_RS10590	0.52	+1.0
93,692	-		BBR_RS10590	0.52	+1.3
93,701	+		BBR_RS10590	0.53	+1.1
93,701	+		BBR_RS10590	0.53	-0.3
93,706	+		BBR_RS10590	0.54	+1.0
93,714	-		BBR_RS10590	0.54	+1.6
93,721	+		BBR_RS10590	0.55	+1.3
93,724	+		BBR_RS10590	0.55	+0.9
93,724	+		BBR_RS10590	0.55	-0.5
93,724	+		BBR_RS10590	0.55	+0.5
93,725	-		BBR_RS10590	0.55	+1.0
93,732	-		BBR_RS10590	0.56	+0.2
93,732	-		BBR_RS10590	0.56	+0.5
93,732	-		BBR_RS10590	0.56	-1.2
93,732	-		BBR_RS10590	0.56	+0.9
93,744	+		BBR_RS10590	0.57	+1.3
93,749	+		BBR_RS10590	0.57	+1.8
93,755	+		BBR_RS10590	0.58	-0.3
93,777	+		BBR_RS10590	0.59	-0.4
93,781	+		BBR_RS10590	0.60	+1.0
93,781	+		BBR_RS10590	0.60	+0.0
93,781	+		BBR_RS10590	0.60	+2.1
93,785	-		BBR_RS10590	0.60	-0.8
93,789	-		BBR_RS10590	0.60	-0.6
93,789	-		BBR_RS10590	0.60	+0.2
93,794	-		BBR_RS10590	0.61	+1.4
93,796	+		BBR_RS10590	0.61	+0.5
93,804	-		BBR_RS10590	0.62	+1.1
93,804	-		BBR_RS10590	0.62	+0.1
93,809	+		BBR_RS10590	0.62	+0.9
93,809	+		BBR_RS10590	0.62	+1.8
93,809	+		BBR_RS10590	0.62	+0.8
93,814	-		BBR_RS10590	0.63	+0.9
93,814	-		BBR_RS10590	0.63	+2.8
93,815	-		BBR_RS10590	0.63	+1.0
93,817	-		BBR_RS10590	0.63	-2.5
93,824	-		BBR_RS10590	0.63	+1.4
93,838	+		BBR_RS10590	0.65	+0.1
93,838	+		BBR_RS10590	0.65	+0.3
93,846	-		BBR_RS10590	0.65	-0.6
93,846	-		BBR_RS10590	0.65	-0.1
93,859	+		BBR_RS10590	0.66	+0.9
93,861	+		BBR_RS10590	0.66	+0.9
93,867	+		BBR_RS10590	0.67	-1.8
93,877	-		BBR_RS10590	0.68	+0.6
93,877	-		BBR_RS10590	0.68	-1.0
93,877	-		BBR_RS10590	0.68	+1.3
93,898	+		BBR_RS10590	0.69	+1.3
93,912	+		BBR_RS10590	0.71	+1.0
93,928	+		BBR_RS10590	0.72	+1.2
93,932	+		BBR_RS10590	0.72	+0.4
93,932	+		BBR_RS10590	0.72	-0.6
93,951	-		BBR_RS10590	0.74	-1.6
93,951	-		BBR_RS10590	0.74	+1.7
93,959	+		BBR_RS10590	0.75	+1.8
93,967	+		BBR_RS10590	0.75	+1.6
93,972	-		BBR_RS10590	0.76	+1.5
93,978	+		BBR_RS10590	0.76	+0.7
93,978	+		BBR_RS10590	0.76	+0.2
93,978	+		BBR_RS10590	0.76	+1.2
93,978	+		BBR_RS10590	0.76	-0.6
93,978	+		BBR_RS10590	0.76	+0.7
93,980	+		BBR_RS10590	0.76	+1.5
93,981	+		BBR_RS10590	0.76	+0.6
93,981	+		BBR_RS10590	0.76	+2.6
93,981	+		BBR_RS10590	0.76	+0.5
93,984	-		BBR_RS10590	0.77	+0.5
93,986	-		BBR_RS10590	0.77	+1.2
93,989	-		BBR_RS10590	0.77	+0.7
93,993	+		BBR_RS10590	0.77	+1.1
93,997	+		BBR_RS10590	0.78	-1.2
94,032	+		BBR_RS10590	0.81	-1.7
94,039	-		BBR_RS10590	0.81	-0.6
94,039	-		BBR_RS10590	0.81	+0.4
94,045	-		BBR_RS10590	0.82	-1.3
94,049	+		BBR_RS10590	0.82	-0.1
94,052	-		BBR_RS10590	0.82	-2.7
94,057	+		BBR_RS10590	0.83	+1.8
94,057	+		BBR_RS10590	0.83	+1.2
94,057	-		BBR_RS10590	0.83	+0.9
94,057	-		BBR_RS10590	0.83	-0.2
94,057	-		BBR_RS10590	0.83	+2.9
94,057	-		BBR_RS10590	0.83	+0.9
94,070	-		BBR_RS10590	0.84	+0.9
94,076	+		BBR_RS10590	0.84	+0.7
94,076	+		BBR_RS10590	0.84	+0.5
94,081	+		BBR_RS10590	0.85	+0.2
94,089	-		BBR_RS10590	0.85	+1.3
94,089	-		BBR_RS10590	0.85	+3.0
94,097	+		BBR_RS10590	0.86	+2.2
94,097	+		BBR_RS10590	0.86	-1.3
94,107	+		BBR_RS10590	0.87	+0.7
94,114	+		BBR_RS10590	0.87	+1.8
94,122	-		BBR_RS10590	0.88	+0.3
94,125	+		BBR_RS10590	0.88	+1.0
94,129	-		BBR_RS10590	0.89	+0.3
94,131	+		BBR_RS10590	0.89	-1.1
94,147	-				+1.0
94,147	-				+0.7
94,148	+				-1.1
94,149	+				+1.3
94,158	+				-0.0
94,158	+				-0.0
94,158	-				+1.6
94,166	-				+0.1
94,174	-				+0.4
94,177	+				+0.2
94,184	-				-1.5
94,187	+				+1.2
94,190	-				+0.6
94,195	+				+0.6
94,195	+				+0.1
94,195	+				+1.0
94,195	-				+0.6
94,195	-				+2.2
94,195	-				+1.3
94,197	+				-0.5
94,197	+				+1.6
94,202	+				+1.3
94,202	+				+1.3
94,203	-				-0.2
94,205	-				-1.5
94,205	-				-2.6
94,205	-				+0.5
94,205	-				+0.2
94,205	-				-1.6
94,205	-				+0.8
94,221	+				+0.8
94,241	+				-1.9
94,254	+				+0.5
94,259	+				+0.3
94,263	-				-0.6
94,267	-				+0.0
94,267	-				-0.3
94,267	-				-0.7
94,292	+				+1.5
94,299	+				+0.3
94,299	+				+1.9
94,302	+				-0.1
94,302	+				-0.8
94,302	+				+2.4
94,304	+				+0.2
94,304	+				+0.5
94,304	+				-1.2
94,304	+				+0.8
94,310	-				-2.8
94,312	-				+0.8
94,312	-				+1.4
94,312	-				-1.0
94,348	-				-1.3
94,381	-				+0.8
94,387	+				+0.9
94,400	-				+0.2
94,411	+		BBR_RS10595	0.10	-2.1
94,426	-		BBR_RS10595	0.13	-0.2
94,445	+		BBR_RS10595	0.16	-1.7
94,447	+		BBR_RS10595	0.16	+1.2
94,447	+		BBR_RS10595	0.16	-0.2
94,455	+		BBR_RS10595	0.17	+1.6
94,455	+		BBR_RS10595	0.17	-1.8
94,479	+		BBR_RS10595	0.21	-1.5
94,479	+		BBR_RS10595	0.21	+0.9
94,479	+		BBR_RS10595	0.21	+1.6
94,479	+		BBR_RS10595	0.21	+1.1
94,479	+		BBR_RS10595	0.21	-0.7
94,482	-		BBR_RS10595	0.21	-1.1
94,485	-		BBR_RS10595	0.22	-0.6
94,487	-		BBR_RS10595	0.22	+0.3
94,487	-		BBR_RS10595	0.22	-0.6
94,488	+		BBR_RS10595	0.22	-2.3
94,490	-		BBR_RS10595	0.23	+2.9
94,498	+		BBR_RS10595	0.24	+0.4
94,513	-		BBR_RS10595	0.26	-1.4
94,517	+		BBR_RS10595	0.27	+0.0
94,526	-		BBR_RS10595	0.28	-1.9
94,549	+		BBR_RS10595	0.32	+2.3
94,551	+		BBR_RS10595	0.32	-0.6
94,551	+		BBR_RS10595	0.32	-2.1
94,551	+		BBR_RS10595	0.32	+1.2
94,558	-		BBR_RS10595	0.33	-1.2
94,572	+		BBR_RS10595	0.35	+0.7
94,573	-		BBR_RS10595	0.36	-1.7
94,573	-		BBR_RS10595	0.36	-1.5
94,586	+		BBR_RS10595	0.38	+0.3
94,594	+		BBR_RS10595	0.39	-2.3
94,598	+		BBR_RS10595	0.39	-1.3
94,598	+		BBR_RS10595	0.39	+0.4
94,598	+		BBR_RS10595	0.39	+0.5
94,600	+		BBR_RS10595	0.40	-1.3
94,605	+		BBR_RS10595	0.40	+0.7
94,615	+		BBR_RS10595	0.42	-1.0
94,625	+		BBR_RS10595	0.44	+0.8
94,626	+		BBR_RS10595	0.44	-1.4
94,626	+		BBR_RS10595	0.44	-1.1
94,626	+		BBR_RS10595	0.44	-0.9
94,626	+		BBR_RS10595	0.44	+1.2
94,626	+		BBR_RS10595	0.44	+0.1
94,626	+		BBR_RS10595	0.44	-1.5
94,626	+		BBR_RS10595	0.44	+1.0
94,633	-		BBR_RS10595	0.45	-2.3
94,634	-		BBR_RS10595	0.45	-0.4
94,634	-		BBR_RS10595	0.45	+0.1
94,642	-		BBR_RS10595	0.46	-2.7
94,647	-		BBR_RS10595	0.47	-2.1
94,649	-		BBR_RS10595	0.47	+2.3
94,659	+		BBR_RS10595	0.49	+1.0
94,659	+		BBR_RS10595	0.49	+1.2
94,663	-		BBR_RS10595	0.49	-1.6
94,665	-		BBR_RS10595	0.50	-0.6
94,667	+		BBR_RS10595	0.50	-0.2
94,667	+		BBR_RS10595	0.50	-1.2
94,673	+		BBR_RS10595	0.51	+0.7
94,676	+		BBR_RS10595	0.51	+1.6
94,676	+		BBR_RS10595	0.51	-2.1
94,678	+		BBR_RS10595	0.52	-2.5
94,678	+		BBR_RS10595	0.52	+0.4
94,686	-		BBR_RS10595	0.53	+1.8
94,688	+		BBR_RS10595	0.53	+0.2
94,721	-		BBR_RS10595	0.58	+1.8
94,737	+		BBR_RS10595	0.61	+0.4
94,777	+		BBR_RS10595	0.67	+0.8
94,798	-		BBR_RS10595	0.70	+0.5
94,798	-		BBR_RS10595	0.70	+0.7
94,798	-		BBR_RS10595	0.70	-1.1
94,798	-		BBR_RS10595	0.70	+1.1
94,812	+		BBR_RS10595	0.73	-0.4
94,828	+		BBR_RS10595	0.75	+1.0
94,834	+		BBR_RS10595	0.76	+0.2
94,834	-		BBR_RS10595	0.76	+0.9
94,834	-		BBR_RS10595	0.76	+0.8
94,836	+		BBR_RS10595	0.76	-1.3
94,836	+		BBR_RS10595	0.76	-0.5
94,836	+		BBR_RS10595	0.76	-2.6
94,836	+		BBR_RS10595	0.76	+0.6
94,850	+		BBR_RS10595	0.78	-0.6
94,858	-		BBR_RS10595	0.80	+0.8
94,858	-		BBR_RS10595	0.80	+1.9
94,860	+		BBR_RS10595	0.80	+0.7
94,860	+		BBR_RS10595	0.80	+0.3
94,868	-		BBR_RS10595	0.81	-0.3
94,868	-		BBR_RS10595	0.81	-2.4
94,868	-		BBR_RS10595	0.81	-0.5
94,901	-		BBR_RS10595	0.86	-0.5
94,910	+		BBR_RS10595	0.88	+1.1
94,910	+		BBR_RS10595	0.88	+0.4
94,918	+		BBR_RS10595	0.89	+0.3
94,918	+		BBR_RS10595	0.89	-1.7
94,918	+		BBR_RS10595	0.89	-2.3
94,918	+		BBR_RS10595	0.89	+0.4
94,918	+		BBR_RS10595	0.89	+1.7
94,918	+		BBR_RS10595	0.89	-2.3
94,918	+		BBR_RS10595	0.89	-0.2
94,937	+				-1.2
94,937	+				+0.3
94,937	+				+0.5
94,937	+				+0.7
94,937	+				+0.9
94,937	+				+0.3
94,937	+				+0.4
94,945	-				+2.4
94,945	-				+2.1
94,945	-				+0.0
94,945	-				-0.6
94,945	-				+2.3
94,950	+				-0.3
95,023	-				+1.0
95,030	+				+1.2
95,030	+				-2.2
95,030	+				+0.7
95,032	-				-0.4
95,038	-				-1.1
95,050	+				-2.1
95,050	+				-0.1
95,074	+				-0.3
95,074	+				-2.0
95,079	+				-1.0
95,079	+				-1.7
95,082	-				+1.1
95,082	-				-2.4
95,087	-				-1.5
95,092	-				+0.7
95,092	-				+1.3
95,092	-				+0.7
95,092	-				-0.0
95,092	-				-0.4
95,100	-				-1.2
95,111	-				+0.7
95,115	+				-1.2
95,116	+				-2.7
95,124	-				-2.1
95,131	-				-0.1
95,131	-				-1.0
95,133	+				-2.5
95,151	-				-1.4
95,210	-				-0.8