Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4018

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4015 and Dshi_4016 are separated by 156 nucleotidesDshi_4016 and Dshi_4017 are separated by 87 nucleotidesDshi_4017 and Dshi_4018 are separated by 23 nucleotidesDshi_4018 and Dshi_4019 are separated by 40 nucleotidesDshi_4019 and Dshi_4020 are separated by 278 nucleotides Dshi_4015: Dshi_4015 - parB-like partition protein (RefSeq), at 81,749 to 83,731 _4015 Dshi_4016: Dshi_4016 - hypothetical protein (RefSeq), at 83,888 to 84,277 _4016 Dshi_4017: Dshi_4017 - hypothetical protein (RefSeq), at 84,365 to 84,574 _4017 Dshi_4018: Dshi_4018 - domain of unknown function DUF1738 (RefSeq), at 84,598 to 85,536 _4018 Dshi_4019: Dshi_4019 - hypothetical protein (RefSeq), at 85,577 to 86,062 _4019 Dshi_4020: Dshi_4020 - filamentation induced by cAMP protein Fic (RefSeq), at 86,341 to 87,543 _4020 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 83.607 kb on - strandat 83.668 kb on + strandat 83.668 kb on + strandat 83.671 kb on - strandat 83.706 kb on + strandat 83.739 kb on + strandat 83.810 kb on + strandat 83.880 kb on + strandat 83.884 kb on + strandat 83.888 kb on - strandat 84.020 kb on + strand, within Dshi_4016at 84.028 kb on - strand, within Dshi_4016at 84.158 kb on + strand, within Dshi_4016at 84.210 kb on - strand, within Dshi_4016at 84.238 kb on + strand, within Dshi_4016at 84.246 kb on - strandat 84.246 kb on - strandat 84.246 kb on - strandat 84.260 kb on - strandat 84.265 kb on - strandat 84.294 kb on - strandat 84.376 kb on + strandat 84.377 kb on + strandat 84.422 kb on + strand, within Dshi_4017at 84.425 kb on - strand, within Dshi_4017at 84.427 kb on + strand, within Dshi_4017at 84.430 kb on - strand, within Dshi_4017at 84.911 kb on + strand, within Dshi_4018at 84.918 kb on + strand, within Dshi_4018at 84.946 kb on - strand, within Dshi_4018at 84.948 kb on + strand, within Dshi_4018at 84.968 kb on + strand, within Dshi_4018at 84.988 kb on + strand, within Dshi_4018at 85.062 kb on + strand, within Dshi_4018at 85.088 kb on + strand, within Dshi_4018at 85.136 kb on + strand, within Dshi_4018at 85.146 kb on + strand, within Dshi_4018at 85.260 kb on - strand, within Dshi_4018at 85.312 kb on - strand, within Dshi_4018at 85.352 kb on - strand, within Dshi_4018at 85.392 kb on - strand, within Dshi_4018at 85.531 kb on + strandat 85.568 kb on + strandat 85.686 kb on + strand, within Dshi_4019at 85.713 kb on - strand, within Dshi_4019at 85.742 kb on + strand, within Dshi_4019at 85.792 kb on - strand, within Dshi_4019at 85.816 kb on + strand, within Dshi_4019at 85.916 kb on + strand, within Dshi_4019at 85.959 kb on + strand, within Dshi_4019at 85.982 kb on - strand, within Dshi_4019at 85.985 kb on + strand, within Dshi_4019at 85.996 kb on + strand, within Dshi_4019at 86.021 kb on + strandat 86.049 kb on + strandat 86.071 kb on + strandat 86.094 kb on - strandat 86.103 kb on - strandat 86.122 kb on - strandat 86.166 kb on + strandat 86.166 kb on + strandat 86.166 kb on + strandat 86.370 kb on + strandat 86.453 kb on + strandat 86.485 kb on + strand, within Dshi_4020at 86.521 kb on - strand, within Dshi_4020at 86.521 kb on - strand, within Dshi_4020

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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83,607 - +0.5
83,668 + +0.2
83,668 + +0.4
83,671 - +0.5
83,706 + +2.4
83,739 + -0.8
83,810 + +0.2
83,880 + -0.9
83,884 + +0.7
83,888 - +0.6
84,020 + Dshi_4016 0.34 -1.5
84,028 - Dshi_4016 0.36 -0.9
84,158 + Dshi_4016 0.69 +0.2
84,210 - Dshi_4016 0.83 -0.2
84,238 + Dshi_4016 0.90 -0.4
84,246 - +1.4
84,246 - +0.5
84,246 - -0.2
84,260 - -0.2
84,265 - -0.1
84,294 - -0.6
84,376 + -0.8
84,377 + -0.6
84,422 + Dshi_4017 0.27 +0.1
84,425 - Dshi_4017 0.29 -0.3
84,427 + Dshi_4017 0.30 -0.1
84,430 - Dshi_4017 0.31 -0.5
84,911 + Dshi_4018 0.33 +0.9
84,918 + Dshi_4018 0.34 -0.3
84,946 - Dshi_4018 0.37 +1.2
84,948 + Dshi_4018 0.37 +0.4
84,968 + Dshi_4018 0.39 -1.1
84,988 + Dshi_4018 0.42 +0.3
85,062 + Dshi_4018 0.49 +0.1
85,088 + Dshi_4018 0.52 +0.8
85,136 + Dshi_4018 0.57 -0.9
85,146 + Dshi_4018 0.58 +0.7
85,260 - Dshi_4018 0.71 +0.1
85,312 - Dshi_4018 0.76 +0.2
85,352 - Dshi_4018 0.80 -0.2
85,392 - Dshi_4018 0.85 -1.6
85,531 + +0.4
85,568 + -0.8
85,686 + Dshi_4019 0.22 +0.1
85,713 - Dshi_4019 0.28 -0.6
85,742 + Dshi_4019 0.34 +0.2
85,792 - Dshi_4019 0.44 -0.9
85,816 + Dshi_4019 0.49 -0.5
85,916 + Dshi_4019 0.70 -0.4
85,959 + Dshi_4019 0.79 -0.6
85,982 - Dshi_4019 0.83 -0.5
85,985 + Dshi_4019 0.84 +0.6
85,996 + Dshi_4019 0.86 +1.1
86,021 + -1.7
86,049 + -1.8
86,071 + -0.2
86,094 - -0.2
86,103 - +1.3
86,122 - -0.4
86,166 + +1.3
86,166 + -0.3
86,166 + +0.6
86,370 + +0.8
86,453 + +0.6
86,485 + Dshi_4020 0.12 -0.2
86,521 - Dshi_4020 0.15 +1.1
86,521 - Dshi_4020 0.15 -0.2

Or see this region's nucleotide sequence