Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2916 and Dshi_2917 are separated by 250 nucleotides Dshi_2917 and Dshi_2918 are separated by 28 nucleotides Dshi_2918 and Dshi_2919 are separated by 169 nucleotides
Dshi_2916: Dshi_2916 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,074,228 to 3,075,076
_2916
Dshi_2917: Dshi_2917 - amidohydrolase (RefSeq), at 3,075,327 to 3,076,484
_2917
Dshi_2918: Dshi_2918 - GCN5-related N-acetyltransferase (RefSeq), at 3,076,513 to 3,077,004
_2918
Dshi_2919: Dshi_2919 - chaperonin GroEL (RefSeq), at 3,077,174 to 3,078,817
_2919
Position (kb)
3075
3076
3077 Strain fitness (log2 ratio)
-2
-1
0
1 at 3074.415 kb on - strand, within Dshi_2916 at 3074.465 kb on - strand, within Dshi_2916 at 3074.473 kb on + strand, within Dshi_2916 at 3074.605 kb on - strand, within Dshi_2916 at 3074.645 kb on + strand, within Dshi_2916 at 3074.777 kb on - strand, within Dshi_2916 at 3074.842 kb on + strand, within Dshi_2916 at 3074.850 kb on - strand, within Dshi_2916 at 3074.850 kb on - strand, within Dshi_2916 at 3074.981 kb on + strand, within Dshi_2916 at 3074.989 kb on - strand, within Dshi_2916 at 3075.009 kb on - strand at 3075.050 kb on - strand at 3075.061 kb on + strand at 3075.148 kb on + strand at 3075.171 kb on - strand at 3075.279 kb on - strand at 3075.320 kb on + strand at 3076.188 kb on - strand, within Dshi_2917 at 3076.283 kb on + strand, within Dshi_2917 at 3076.729 kb on + strand, within Dshi_2918 at 3076.866 kb on + strand, within Dshi_2918 at 3076.874 kb on - strand, within Dshi_2918 at 3077.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 3,074,415 - Dshi_2916 0.22 -0.1 3,074,465 - Dshi_2916 0.28 -1.6 3,074,473 + Dshi_2916 0.29 -0.4 3,074,605 - Dshi_2916 0.44 +0.4 3,074,645 + Dshi_2916 0.49 +0.0 3,074,777 - Dshi_2916 0.65 -0.8 3,074,842 + Dshi_2916 0.72 -0.4 3,074,850 - Dshi_2916 0.73 -1.0 3,074,850 - Dshi_2916 0.73 -0.1 3,074,981 + Dshi_2916 0.89 -1.0 3,074,989 - Dshi_2916 0.90 -1.1 3,075,009 - +0.5 3,075,050 - -0.6 3,075,061 + +0.2 3,075,148 + +0.4 3,075,171 - +0.4 3,075,279 - -0.6 3,075,320 + +0.8 3,076,188 - Dshi_2917 0.74 -0.1 3,076,283 + Dshi_2917 0.83 -1.7 3,076,729 + Dshi_2918 0.44 +0.6 3,076,866 + Dshi_2918 0.72 +0.2 3,076,874 - Dshi_2918 0.73 -2.5 3,077,045 - -0.5
Or see this region's nucleotide sequence