Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2855 and Dshi_2856 are separated by 114 nucleotides Dshi_2856 and Dshi_2857 are separated by 85 nucleotides Dshi_2857 and Dshi_2858 are separated by 146 nucleotides Dshi_2858 and Dshi_2859 overlap by 4 nucleotides
Dshi_2855: Dshi_2855 - methylmalonyl-CoA mutase, large subunit (RefSeq), at 3,013,589 to 3,015,562
_2855
Dshi_2856: Dshi_2856 - hypothetical protein (RefSeq), at 3,015,677 to 3,016,192
_2856
Dshi_2857: Dshi_2857 - hypothetical protein (RefSeq), at 3,016,278 to 3,016,748
_2857
Dshi_2858: Dshi_2858 - purine nucleoside phosphorylase (RefSeq), at 3,016,895 to 3,017,599
_2858
Dshi_2859: Dshi_2859 - hypothetical protein (RefSeq), at 3,017,596 to 3,018,039
_2859
Position (kb)
3016
3017 Strain fitness (log2 ratio)
-1
0
1
2 at 3015.395 kb on - strand at 3015.680 kb on + strand at 3015.805 kb on - strand, within Dshi_2856 at 3016.023 kb on + strand, within Dshi_2856 at 3016.219 kb on + strand at 3016.231 kb on + strand at 3016.236 kb on + strand at 3016.237 kb on + strand at 3016.237 kb on + strand at 3016.419 kb on - strand, within Dshi_2857 at 3016.465 kb on + strand, within Dshi_2857 at 3016.511 kb on + strand, within Dshi_2857 at 3016.583 kb on + strand, within Dshi_2857 at 3016.622 kb on - strand, within Dshi_2857 at 3016.863 kb on + strand at 3016.871 kb on - strand at 3017.113 kb on - strand, within Dshi_2858 at 3017.144 kb on + strand, within Dshi_2858 at 3017.358 kb on - strand, within Dshi_2858 at 3017.530 kb on + strand at 3017.589 kb on - strand at 3017.644 kb on - strand, within Dshi_2859
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 3,015,395 - +0.4 3,015,680 + -0.6 3,015,805 - Dshi_2856 0.25 +0.2 3,016,023 + Dshi_2856 0.67 +1.0 3,016,219 + -0.5 3,016,231 + -0.9 3,016,236 + +0.1 3,016,237 + +0.1 3,016,237 + +0.1 3,016,419 - Dshi_2857 0.30 +0.2 3,016,465 + Dshi_2857 0.40 -0.2 3,016,511 + Dshi_2857 0.49 +0.8 3,016,583 + Dshi_2857 0.65 -0.9 3,016,622 - Dshi_2857 0.73 +0.3 3,016,863 + +0.3 3,016,871 - +0.0 3,017,113 - Dshi_2858 0.31 +0.3 3,017,144 + Dshi_2858 0.35 -0.4 3,017,358 - Dshi_2858 0.66 +2.3 3,017,530 + +0.6 3,017,589 - -0.1 3,017,644 - Dshi_2859 0.11 +0.8
Or see this region's nucleotide sequence