Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1285

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1283 and Dshi_1284 are separated by 58 nucleotidesDshi_1284 and Dshi_1285 overlap by 4 nucleotidesDshi_1285 and Dshi_1286 are separated by 204 nucleotides Dshi_1283: Dshi_1283 - Formate--tetrahydrofolate ligase (RefSeq), at 1,335,512 to 1,337,179 _1283 Dshi_1284: Dshi_1284 - chorismate mutase related enzyme (RefSeq), at 1,337,238 to 1,337,558 _1284 Dshi_1285: Dshi_1285 - Methylenetetrahydrofolate dehydrogenase (NADP(+)) (RefSeq), at 1,337,555 to 1,338,454 _1285 Dshi_1286: Dshi_1286 - hypothetical protein (RefSeq), at 1,338,659 to 1,339,942 _1286 Position (kb) 1337 1338 1339Strain fitness (log2 ratio) -2 -1 0 1at 1336.877 kb on - strand, within Dshi_1283at 1336.941 kb on + strand, within Dshi_1283at 1336.942 kb on - strand, within Dshi_1283at 1336.966 kb on + strand, within Dshi_1283at 1337.088 kb on - strandat 1338.518 kb on + strandat 1338.584 kb on - strandat 1338.693 kb on - strandat 1338.742 kb on + strandat 1338.790 kb on + strand, within Dshi_1286at 1338.800 kb on + strand, within Dshi_1286at 1338.803 kb on - strand, within Dshi_1286at 1338.808 kb on - strand, within Dshi_1286at 1338.992 kb on - strand, within Dshi_1286at 1339.067 kb on - strand, within Dshi_1286at 1339.079 kb on - strand, within Dshi_1286

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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1,336,877 - Dshi_1283 0.82 -1.6
1,336,941 + Dshi_1283 0.86 +0.1
1,336,942 - Dshi_1283 0.86 -1.3
1,336,966 + Dshi_1283 0.87 -0.9
1,337,088 - -0.3
1,338,518 + +0.4
1,338,584 - +0.5
1,338,693 - +0.8
1,338,742 + -0.3
1,338,790 + Dshi_1286 0.10 -0.9
1,338,800 + Dshi_1286 0.11 -1.9
1,338,803 - Dshi_1286 0.11 -0.2
1,338,808 - Dshi_1286 0.12 -0.0
1,338,992 - Dshi_1286 0.26 +1.5
1,339,067 - Dshi_1286 0.32 -1.6
1,339,079 - Dshi_1286 0.33 -0.4

Or see this region's nucleotide sequence