Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5088

Experiment: KB with Avocatin A 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Avocatin A 10 mM
6,036,618	+		Psyr_5087	0.62	-0.7
6,036,770	+		Psyr_5087	0.70	+0.3
6,036,771	-		Psyr_5087	0.70	-0.2
6,036,771	-		Psyr_5087	0.70	+0.3
6,036,771	-		Psyr_5087	0.70	+0.8
6,036,771	-		Psyr_5087	0.70	-0.4
6,036,789	-		Psyr_5087	0.71	+0.1
6,036,799	-		Psyr_5087	0.71	+0.4
6,036,799	-		Psyr_5087	0.71	+0.8
6,036,799	-		Psyr_5087	0.71	+0.0
6,036,799	-		Psyr_5087	0.71	+0.6
6,036,851	+		Psyr_5087	0.74	-0.9
6,036,851	+		Psyr_5087	0.74	+1.9
6,036,851	+		Psyr_5087	0.74	+1.0
6,036,851	+		Psyr_5087	0.74	-2.7
6,036,852	-		Psyr_5087	0.74	+0.5
6,036,852	-		Psyr_5087	0.74	+2.9
6,036,852	-		Psyr_5087	0.74	-1.2
6,036,852	-		Psyr_5087	0.74	+1.7
6,036,852	-		Psyr_5087	0.74	+0.4
6,036,852	-		Psyr_5087	0.74	+2.3
6,036,852	-		Psyr_5087	0.74	-0.1
6,036,852	-		Psyr_5087	0.74	-0.5
6,036,879	+		Psyr_5087	0.76	+1.2
6,036,879	+		Psyr_5087	0.76	+0.6
6,036,879	+		Psyr_5087	0.76	-1.8
6,036,880	-		Psyr_5087	0.76	+0.3
6,037,014	-		Psyr_5087	0.83	+1.3
6,037,014	-		Psyr_5087	0.83	+0.4
6,037,228	+				-0.7
6,037,229	-				-1.1
6,037,229	-				-0.2
6,037,296	+				-0.7
6,037,296	+				+1.3
6,037,297	-				-0.1
6,037,297	-				-0.8
6,037,297	-				-0.6
6,037,311	+				-0.6
6,037,311	+				+0.8
6,037,311	+				-0.3
6,037,311	+				-0.2
6,037,311	+				+0.6
6,037,311	+				-1.0
6,037,311	+				-0.3
6,037,311	+				-1.2
6,037,311	+				+0.7
6,037,311	+				-0.0
6,037,311	+				-0.3
6,037,311	+				-1.2
6,037,311	+				-0.1
6,037,311	+				-2.0
6,037,311	+				-1.4
6,037,311	+				-0.5
6,037,311	+				+2.2
6,037,311	+				+0.3
6,037,311	+				-0.1
6,037,311	+				-0.6
6,037,312	-				+1.9
6,037,312	-				-1.4
6,037,312	-				-0.0
6,037,312	-				+0.8
6,037,312	-				-2.1
6,037,312	-				+0.6
6,037,312	-				+0.2
6,037,312	-				-0.9
6,037,312	-				+1.2
6,037,312	-				+1.3
6,037,312	-				+0.5
6,037,312	-				-0.1
6,037,312	-				-0.8
6,037,312	-				-0.3
6,037,312	-				+0.7
6,037,312	-				-0.0
6,037,312	-				+1.5
6,037,312	-				+0.6
6,037,312	-				+0.5
6,037,312	-				-0.4
6,037,315	+				+0.4
6,037,315	+				+0.1
6,037,315	+				+0.4
6,037,315	+				-0.1
6,037,315	+				+3.2
6,037,315	+				-0.7
6,037,315	+				-0.1
6,037,315	+				+0.6
6,037,315	+				-1.6
6,037,315	+				-0.4
6,037,315	+				+1.7
6,037,315	+				+0.6
6,037,315	+				-0.6
6,037,316	-				+0.2
6,037,316	-				+1.1
6,037,316	-				-0.1
6,037,316	-				-0.1
6,037,316	-				-1.1
6,037,316	-				+0.3
6,037,316	-				-1.5
6,037,316	-				-1.2
6,037,335	+				-0.7
6,037,335	+				-0.7
6,037,336	-				-0.7
6,037,420	+				-0.0
6,037,420	+				-0.5
6,037,420	+				-1.0
6,037,420	+				+0.0
6,037,420	+				-1.2
6,037,420	+				+0.7
6,037,420	+				-1.0
6,037,420	+				-0.7
6,037,420	+				-0.7
6,037,420	+				-0.5
6,037,420	+				-0.3
6,037,420	+				-0.2
6,037,420	+				+0.3
6,037,420	+				+1.3
6,037,421	-				+0.2
6,037,421	-				-0.5
6,037,421	-				+1.2
6,037,421	-				-1.7
6,037,421	-				-0.2
6,037,421	-				-1.5
6,037,421	-				-0.0
6,037,421	-				+0.2
6,037,421	-				-0.2
6,037,421	-				-1.1
6,037,421	-				-0.3
6,037,421	-				-1.8
6,037,421	-				+0.2
6,037,421	-				+2.3
6,037,421	-				-1.2
6,037,421	-				-0.5
6,037,421	-				-0.9
6,037,847	+		Psyr_5088	0.64	-1.8
6,037,847	+		Psyr_5088	0.64	+1.8
6,037,847	+		Psyr_5088	0.64	-0.5
6,037,847	+		Psyr_5088	0.64	-0.5
6,037,847	+		Psyr_5088	0.64	+0.7
6,037,847	+		Psyr_5088	0.64	-0.3
6,037,847	+		Psyr_5088	0.64	-1.4
6,037,847	+		Psyr_5088	0.64	+0.0
6,037,847	+		Psyr_5088	0.64	+1.4
6,037,847	+		Psyr_5088	0.64	-1.7
6,037,847	+		Psyr_5088	0.64	+0.7
6,037,847	+		Psyr_5088	0.64	-0.9
6,037,848	-		Psyr_5088	0.64	+0.3
6,037,848	-		Psyr_5088	0.64	-0.9
6,037,848	-		Psyr_5088	0.64	+0.9
6,037,848	-		Psyr_5088	0.64	+0.9
6,038,032	+				-0.2
6,038,032	+				+0.9
6,038,032	+				-0.6
6,038,032	+				+0.3
6,038,032	+				-0.4
6,038,032	+				-0.4
6,038,032	+				-0.3
6,038,032	+				-0.3
6,038,032	+				-1.2
6,038,033	-				+0.3
6,038,033	-				-1.8
6,038,033	-				+0.9
6,038,033	-				-0.3
6,038,033	-				-0.6
6,038,033	-				-0.1
6,038,033	-				+1.1
6,038,033	-				-0.8
6,038,033	-				+0.9
6,038,033	-				+0.9
6,038,033	-				+1.2
6,038,033	-				+0.3
6,038,098	+				+1.9
6,038,119	+				+0.9
6,038,119	+				-1.0
6,038,119	+				+0.5
6,038,120	-				-0.7
6,038,120	-				-3.0
6,038,120	-				-0.8
6,038,226	+		Psyr_5089	0.14	-1.3
6,038,227	-		Psyr_5089	0.14	+0.1
6,038,227	-		Psyr_5089	0.14	+0.3
6,038,483	+		Psyr_5089	0.38	-1.3
6,038,483	+		Psyr_5089	0.38	-1.0
6,038,483	+		Psyr_5089	0.38	+0.9
6,038,483	+		Psyr_5089	0.38	-0.5
6,038,483	+		Psyr_5089	0.38	-0.9
6,038,484	-		Psyr_5089	0.38	-1.1
6,038,484	-		Psyr_5089	0.38	+0.0
6,038,484	-		Psyr_5089	0.38	-0.6
6,038,926	-		Psyr_5089	0.79	+1.9
6,038,926	-		Psyr_5089	0.79	-2.7