Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4893 and Psyr_4894 are separated by 19 nucleotides Psyr_4894 and Psyr_4895 are separated by 106 nucleotides Psyr_4895 and Psyr_4896 overlap by 14 nucleotides Psyr_4896 and Psyr_4897 overlap by 1 nucleotides
Psyr_4893: Psyr_4893 - imidazole glycerol phosphate synthase subunit hisF, at 5,805,819 to 5,806,589
_4893
Psyr_4894: Psyr_4894 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 5,806,609 to 5,807,346
_4894
Psyr_4895: Psyr_4895 - conserved hypothetical protein, at 5,807,453 to 5,807,731
_4895
Psyr_4896: Psyr_4896 - imidazole glycerol phosphate synthase subunit hisH, at 5,807,718 to 5,808,356
_4896
Psyr_4897: Psyr_4897 - imidazoleglycerol-phosphate dehydratase, at 5,808,356 to 5,808,949
_4897
Position (kb) 5807
5808 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5806.667 kb on + strand at 5806.667 kb on + strand at 5806.667 kb on + strand at 5806.668 kb on - strand at 5806.851 kb on - strand, within Psyr_4894 at 5806.851 kb on - strand, within Psyr_4894 at 5807.048 kb on + strand, within Psyr_4894 at 5807.048 kb on + strand, within Psyr_4894 at 5807.048 kb on + strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.049 kb on - strand, within Psyr_4894 at 5807.069 kb on + strand, within Psyr_4894 at 5807.069 kb on + strand, within Psyr_4894 at 5807.069 kb on + strand, within Psyr_4894 at 5807.069 kb on + strand, within Psyr_4894 at 5807.070 kb on - strand, within Psyr_4894 at 5807.070 kb on - strand, within Psyr_4894 at 5807.070 kb on - strand, within Psyr_4894 at 5807.070 kb on - strand, within Psyr_4894 at 5807.350 kb on + strand at 5807.351 kb on - strand at 5807.351 kb on - strand at 5807.351 kb on - strand at 5807.351 kb on - strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.398 kb on + strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.399 kb on - strand at 5807.404 kb on + strand at 5807.404 kb on + strand at 5807.404 kb on + strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.451 kb on - strand at 5807.454 kb on + strand at 5807.454 kb on + strand at 5807.455 kb on - strand at 5807.455 kb on - strand at 5807.541 kb on + strand, within Psyr_4895 at 5807.541 kb on + strand, within Psyr_4895 at 5807.541 kb on + strand, within Psyr_4895 at 5807.542 kb on - strand, within Psyr_4895 at 5807.544 kb on + strand, within Psyr_4895 at 5807.545 kb on - strand, within Psyr_4895 at 5807.545 kb on - strand, within Psyr_4895 at 5807.696 kb on - strand, within Psyr_4895 at 5807.888 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.890 kb on + strand, within Psyr_4896 at 5807.891 kb on - strand, within Psyr_4896 at 5807.891 kb on - strand, within Psyr_4896 at 5807.891 kb on - strand, within Psyr_4896 at 5807.908 kb on + strand, within Psyr_4896 at 5807.908 kb on + strand, within Psyr_4896 at 5807.908 kb on + strand, within Psyr_4896 at 5807.909 kb on - strand, within Psyr_4896 at 5807.909 kb on - strand, within Psyr_4896 at 5807.909 kb on - strand, within Psyr_4896 at 5808.036 kb on + strand, within Psyr_4896 at 5808.037 kb on - strand, within Psyr_4896 at 5808.037 kb on - strand, within Psyr_4896 at 5808.119 kb on + strand, within Psyr_4896 at 5808.263 kb on + strand, within Psyr_4896 at 5808.394 kb on + strand at 5808.566 kb on + strand, within Psyr_4897 at 5808.567 kb on - strand, within Psyr_4897 at 5808.582 kb on + strand, within Psyr_4897 at 5808.583 kb on - strand, within Psyr_4897 at 5808.660 kb on + strand, within Psyr_4897 at 5808.661 kb on - strand, within Psyr_4897 at 5808.661 kb on - strand, within Psyr_4897
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 5,806,667 + -1.5 5,806,667 + -2.5 5,806,667 + -2.6 5,806,668 - +1.3 5,806,851 - Psyr_4894 0.33 +0.6 5,806,851 - Psyr_4894 0.33 -0.8 5,807,048 + Psyr_4894 0.59 +0.9 5,807,048 + Psyr_4894 0.59 +0.3 5,807,048 + Psyr_4894 0.59 +0.9 5,807,049 - Psyr_4894 0.60 -0.7 5,807,049 - Psyr_4894 0.60 +0.9 5,807,049 - Psyr_4894 0.60 +0.3 5,807,049 - Psyr_4894 0.60 -0.0 5,807,049 - Psyr_4894 0.60 -0.4 5,807,049 - Psyr_4894 0.60 -0.6 5,807,069 + Psyr_4894 0.62 -0.9 5,807,069 + Psyr_4894 0.62 -1.6 5,807,069 + Psyr_4894 0.62 +0.2 5,807,069 + Psyr_4894 0.62 -0.9 5,807,070 - Psyr_4894 0.62 +0.8 5,807,070 - Psyr_4894 0.62 -1.2 5,807,070 - Psyr_4894 0.62 -0.1 5,807,070 - Psyr_4894 0.62 -1.4 5,807,350 + +1.9 5,807,351 - -0.3 5,807,351 - +0.9 5,807,351 - +1.9 5,807,351 - +0.1 5,807,398 + +1.1 5,807,398 + -0.1 5,807,398 + +0.6 5,807,398 + -1.0 5,807,398 + -1.5 5,807,399 - -2.0 5,807,399 - +0.3 5,807,399 - +0.0 5,807,399 - +0.3 5,807,399 - -1.6 5,807,404 + -0.9 5,807,404 + -0.4 5,807,404 + -1.9 5,807,451 - +0.1 5,807,451 - -0.9 5,807,451 - -1.3 5,807,451 - +1.3 5,807,454 + -1.7 5,807,454 + +1.3 5,807,455 - -1.9 5,807,455 - -1.6 5,807,541 + Psyr_4895 0.32 -0.3 5,807,541 + Psyr_4895 0.32 -1.2 5,807,541 + Psyr_4895 0.32 -0.9 5,807,542 - Psyr_4895 0.32 +0.7 5,807,544 + Psyr_4895 0.33 +3.5 5,807,545 - Psyr_4895 0.33 -0.1 5,807,545 - Psyr_4895 0.33 -2.4 5,807,696 - Psyr_4895 0.87 -1.0 5,807,888 + Psyr_4896 0.27 -0.9 5,807,890 + Psyr_4896 0.27 -2.5 5,807,890 + Psyr_4896 0.27 -0.9 5,807,890 + Psyr_4896 0.27 -1.1 5,807,890 + Psyr_4896 0.27 +1.4 5,807,890 + Psyr_4896 0.27 -2.5 5,807,890 + Psyr_4896 0.27 -0.3 5,807,890 + Psyr_4896 0.27 +2.5 5,807,891 - Psyr_4896 0.27 +3.5 5,807,891 - Psyr_4896 0.27 +3.5 5,807,891 - Psyr_4896 0.27 +0.3 5,807,908 + Psyr_4896 0.30 -0.1 5,807,908 + Psyr_4896 0.30 -0.4 5,807,908 + Psyr_4896 0.30 +0.1 5,807,909 - Psyr_4896 0.30 +0.3 5,807,909 - Psyr_4896 0.30 +1.4 5,807,909 - Psyr_4896 0.30 +0.3 5,808,036 + Psyr_4896 0.50 +1.5 5,808,037 - Psyr_4896 0.50 -2.5 5,808,037 - Psyr_4896 0.50 -0.9 5,808,119 + Psyr_4896 0.63 -0.3 5,808,263 + Psyr_4896 0.85 +0.6 5,808,394 + -0.1 5,808,566 + Psyr_4897 0.35 +0.0 5,808,567 - Psyr_4897 0.36 +0.9 5,808,582 + Psyr_4897 0.38 -1.9 5,808,583 - Psyr_4897 0.38 +1.7 5,808,660 + Psyr_4897 0.51 -0.6 5,808,661 - Psyr_4897 0.51 +0.6 5,808,661 - Psyr_4897 0.51 -1.0
Or see this region's nucleotide sequence