Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4753 and Psyr_4754 overlap by 1 nucleotides Psyr_4754 and Psyr_4755 are separated by 267 nucleotides Psyr_4755 and Psyr_4756 are separated by 7 nucleotides Psyr_4756 and Psyr_4757 are separated by 54 nucleotides
Psyr_4753: Psyr_4753 - Insulinase-like:Peptidase M16, C-terminal, at 5,629,557 to 5,631,047
_4753
Psyr_4754: Psyr_4754 - 16S rRNA m(2)G-966 methyltransferase, at 5,631,047 to 5,631,637
_4754
Psyr_4755: Psyr_4755 - hydrolase, alpha/beta fold family, at 5,631,905 to 5,632,939
_4755
Psyr_4756: Psyr_4756 - 3-mercaptopyruvate sulfurtransferase, at 5,632,947 to 5,633,801
_4756
Psyr_4757: Psyr_4757 - transcriptional regulator, TetR family, at 5,633,856 to 5,634,518
_4757
Position (kb) 5631
5632
5633 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5630.972 kb on + strand at 5631.094 kb on + strand at 5631.204 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.522 kb on - strand, within Psyr_4754 at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.605 kb on + strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.606 kb on - strand at 5631.608 kb on + strand at 5631.647 kb on + strand at 5631.647 kb on + strand at 5631.647 kb on + strand at 5631.648 kb on - strand at 5631.648 kb on - strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.739 kb on + strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.740 kb on - strand at 5631.743 kb on + strand at 5631.743 kb on + strand at 5631.743 kb on + strand at 5631.744 kb on - strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.818 kb on + strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.819 kb on - strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.839 kb on + strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.840 kb on - strand at 5631.855 kb on + strand at 5631.855 kb on + strand at 5631.855 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.866 kb on + strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.867 kb on - strand at 5631.920 kb on - strand at 5632.151 kb on + strand, within Psyr_4755 at 5632.151 kb on + strand, within Psyr_4755 at 5632.151 kb on + strand, within Psyr_4755 at 5632.151 kb on + strand, within Psyr_4755 at 5632.254 kb on - strand, within Psyr_4755 at 5632.254 kb on - strand, within Psyr_4755 at 5632.254 kb on - strand, within Psyr_4755 at 5632.329 kb on - strand, within Psyr_4755 at 5632.329 kb on - strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.370 kb on + strand, within Psyr_4755 at 5632.371 kb on - strand, within Psyr_4755 at 5632.371 kb on - strand, within Psyr_4755 at 5632.371 kb on - strand, within Psyr_4755 at 5632.371 kb on - strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.514 kb on + strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.515 kb on - strand, within Psyr_4755 at 5632.516 kb on + strand, within Psyr_4755 at 5632.670 kb on + strand, within Psyr_4755 at 5632.674 kb on - strand, within Psyr_4755 at 5632.695 kb on - strand, within Psyr_4755 at 5632.697 kb on + strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.698 kb on - strand, within Psyr_4755 at 5632.868 kb on + strand at 5632.869 kb on - strand at 5632.871 kb on + strand at 5632.871 kb on + strand at 5632.872 kb on - strand at 5632.872 kb on - strand at 5632.900 kb on - strand at 5633.008 kb on + strand at 5633.009 kb on - strand at 5633.009 kb on - strand at 5633.009 kb on - strand at 5633.009 kb on - strand at 5633.009 kb on - strand at 5633.083 kb on + strand, within Psyr_4756 at 5633.214 kb on - strand, within Psyr_4756 at 5633.214 kb on - strand, within Psyr_4756 at 5633.241 kb on + strand, within Psyr_4756 at 5633.241 kb on + strand, within Psyr_4756 at 5633.241 kb on + strand, within Psyr_4756 at 5633.242 kb on - strand, within Psyr_4756 at 5633.444 kb on - strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.497 kb on + strand, within Psyr_4756 at 5633.498 kb on - strand, within Psyr_4756 at 5633.498 kb on - strand, within Psyr_4756 at 5633.518 kb on + strand, within Psyr_4756 at 5633.518 kb on + strand, within Psyr_4756 at 5633.518 kb on + strand, within Psyr_4756 at 5633.519 kb on - strand, within Psyr_4756 at 5633.684 kb on - strand, within Psyr_4756
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 5,630,972 + -0.2 5,631,094 + -0.9 5,631,204 - Psyr_4754 0.27 -0.0 5,631,522 - Psyr_4754 0.80 +0.0 5,631,522 - Psyr_4754 0.80 -0.7 5,631,522 - Psyr_4754 0.80 -0.7 5,631,605 + +3.4 5,631,605 + -0.7 5,631,605 + -0.9 5,631,605 + -1.6 5,631,605 + +0.2 5,631,606 - +1.1 5,631,606 - +0.1 5,631,606 - +0.8 5,631,608 + -0.5 5,631,647 + +0.8 5,631,647 + -1.0 5,631,647 + -0.2 5,631,648 - +2.3 5,631,648 - +2.8 5,631,739 + +0.6 5,631,739 + +0.4 5,631,739 + -1.9 5,631,739 + -0.4 5,631,739 + -0.1 5,631,739 + -0.3 5,631,740 - +0.6 5,631,740 - -1.1 5,631,740 - +0.3 5,631,740 - +0.8 5,631,743 + +0.3 5,631,743 + -0.7 5,631,743 + -1.2 5,631,744 - +0.5 5,631,818 + -1.5 5,631,818 + -1.6 5,631,818 + -2.2 5,631,818 + -1.4 5,631,818 + +0.3 5,631,818 + +0.7 5,631,818 + -0.5 5,631,819 - +0.3 5,631,819 - +0.1 5,631,819 - +0.5 5,631,819 - -0.9 5,631,819 - +0.0 5,631,839 + -0.4 5,631,839 + -1.1 5,631,839 + +0.8 5,631,839 + -0.4 5,631,839 + -0.3 5,631,839 + -0.1 5,631,840 - +2.8 5,631,840 - -0.7 5,631,840 - -1.6 5,631,840 - -1.3 5,631,840 - +0.7 5,631,840 - +0.3 5,631,840 - -0.0 5,631,840 - -0.6 5,631,855 + +2.8 5,631,855 + +1.8 5,631,855 + +0.5 5,631,866 + -0.8 5,631,866 + -1.2 5,631,866 + +1.0 5,631,866 + -0.0 5,631,866 + +1.0 5,631,866 + -1.3 5,631,866 + -0.5 5,631,866 + -1.1 5,631,866 + -0.0 5,631,866 + +0.5 5,631,866 + -0.8 5,631,866 + +1.4 5,631,866 + -1.9 5,631,866 + -0.6 5,631,867 - +1.2 5,631,867 - -0.4 5,631,867 - -0.3 5,631,867 - -0.5 5,631,867 - -0.1 5,631,867 - +0.6 5,631,867 - -1.2 5,631,867 - -0.1 5,631,867 - +1.1 5,631,867 - +1.6 5,631,867 - -1.6 5,631,920 - -0.0 5,632,151 + Psyr_4755 0.24 -0.4 5,632,151 + Psyr_4755 0.24 +0.1 5,632,151 + Psyr_4755 0.24 -0.7 5,632,151 + Psyr_4755 0.24 +0.5 5,632,254 - Psyr_4755 0.34 -0.0 5,632,254 - Psyr_4755 0.34 +3.8 5,632,254 - Psyr_4755 0.34 -2.5 5,632,329 - Psyr_4755 0.41 -0.2 5,632,329 - Psyr_4755 0.41 -1.2 5,632,370 + Psyr_4755 0.45 -0.4 5,632,370 + Psyr_4755 0.45 +1.6 5,632,370 + Psyr_4755 0.45 +0.7 5,632,371 - Psyr_4755 0.45 -1.2 5,632,371 - Psyr_4755 0.45 -1.5 5,632,371 - Psyr_4755 0.45 -0.9 5,632,371 - Psyr_4755 0.45 +1.3 5,632,514 + Psyr_4755 0.59 -0.2 5,632,514 + Psyr_4755 0.59 +0.4 5,632,514 + Psyr_4755 0.59 -0.4 5,632,514 + Psyr_4755 0.59 -0.5 5,632,514 + Psyr_4755 0.59 +0.1 5,632,514 + Psyr_4755 0.59 -1.5 5,632,514 + Psyr_4755 0.59 +0.7 5,632,514 + Psyr_4755 0.59 -0.3 5,632,514 + Psyr_4755 0.59 -2.6 5,632,514 + Psyr_4755 0.59 +0.8 5,632,514 + Psyr_4755 0.59 +0.1 5,632,514 + Psyr_4755 0.59 +1.4 5,632,514 + Psyr_4755 0.59 -2.0 5,632,515 - Psyr_4755 0.59 -0.0 5,632,515 - Psyr_4755 0.59 +1.8 5,632,515 - Psyr_4755 0.59 +1.5 5,632,515 - Psyr_4755 0.59 -1.6 5,632,515 - Psyr_4755 0.59 -0.4 5,632,515 - Psyr_4755 0.59 -0.4 5,632,515 - Psyr_4755 0.59 -1.2 5,632,515 - Psyr_4755 0.59 -0.4 5,632,515 - Psyr_4755 0.59 +1.0 5,632,515 - Psyr_4755 0.59 +0.4 5,632,515 - Psyr_4755 0.59 -1.0 5,632,515 - Psyr_4755 0.59 -0.2 5,632,515 - Psyr_4755 0.59 -0.3 5,632,515 - Psyr_4755 0.59 +1.1 5,632,516 + Psyr_4755 0.59 -0.4 5,632,670 + Psyr_4755 0.74 -1.3 5,632,674 - Psyr_4755 0.74 -0.4 5,632,695 - Psyr_4755 0.76 +0.3 5,632,697 + Psyr_4755 0.77 -1.6 5,632,698 - Psyr_4755 0.77 -0.3 5,632,698 - Psyr_4755 0.77 +0.7 5,632,698 - Psyr_4755 0.77 -0.1 5,632,698 - Psyr_4755 0.77 +0.6 5,632,698 - Psyr_4755 0.77 +1.8 5,632,868 + +2.3 5,632,869 - -0.7 5,632,871 + -1.5 5,632,871 + +1.3 5,632,872 - -0.6 5,632,872 - -0.6 5,632,900 - +0.6 5,633,008 + -0.3 5,633,009 - +0.5 5,633,009 - +1.1 5,633,009 - +0.1 5,633,009 - -0.9 5,633,009 - -1.3 5,633,083 + Psyr_4756 0.16 +0.5 5,633,214 - Psyr_4756 0.31 -0.6 5,633,214 - Psyr_4756 0.31 +1.8 5,633,241 + Psyr_4756 0.34 -0.0 5,633,241 + Psyr_4756 0.34 +1.4 5,633,241 + Psyr_4756 0.34 -1.0 5,633,242 - Psyr_4756 0.35 +0.1 5,633,444 - Psyr_4756 0.58 +0.1 5,633,497 + Psyr_4756 0.64 +0.6 5,633,497 + Psyr_4756 0.64 +0.4 5,633,497 + Psyr_4756 0.64 +2.8 5,633,497 + Psyr_4756 0.64 -1.2 5,633,497 + Psyr_4756 0.64 -0.5 5,633,497 + Psyr_4756 0.64 -0.7 5,633,497 + Psyr_4756 0.64 -1.1 5,633,497 + Psyr_4756 0.64 -0.7 5,633,498 - Psyr_4756 0.64 -1.0 5,633,498 - Psyr_4756 0.64 +0.5 5,633,518 + Psyr_4756 0.67 -0.6 5,633,518 + Psyr_4756 0.67 -1.1 5,633,518 + Psyr_4756 0.67 -0.5 5,633,519 - Psyr_4756 0.67 -0.4 5,633,684 - Psyr_4756 0.86 +0.6
Or see this region's nucleotide sequence