Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4706 and Psyr_4707 are separated by 409 nucleotides Psyr_4707 and Psyr_4708 are separated by 126 nucleotides
Psyr_4706: Psyr_4706 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 5,575,630 to 5,577,255
_4706
Psyr_4707: Psyr_4707 - Protein of unknown function DUF1568, at 5,577,665 to 5,578,123
_4707
Psyr_4708: Psyr_4708 - transcriptional regulator, AraC family with amidase-like domain protein, at 5,578,250 to 5,579,353
_4708
Position (kb) 5577
5578
5579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5577.030 kb on + strand, within Psyr_4706 at 5577.030 kb on + strand, within Psyr_4706 at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.288 kb on + strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.289 kb on - strand at 5577.329 kb on + strand at 5577.330 kb on - strand at 5577.383 kb on - strand at 5577.466 kb on - strand at 5577.631 kb on - strand at 5577.676 kb on + strand at 5577.676 kb on + strand at 5577.677 kb on - strand at 5577.677 kb on - strand at 5577.725 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.742 kb on + strand, within Psyr_4707 at 5577.743 kb on - strand, within Psyr_4707 at 5577.743 kb on - strand, within Psyr_4707 at 5577.744 kb on + strand, within Psyr_4707 at 5577.745 kb on - strand, within Psyr_4707 at 5577.863 kb on + strand, within Psyr_4707 at 5577.863 kb on + strand, within Psyr_4707 at 5577.863 kb on + strand, within Psyr_4707 at 5577.864 kb on - strand, within Psyr_4707 at 5577.947 kb on - strand, within Psyr_4707 at 5578.028 kb on + strand, within Psyr_4707 at 5578.028 kb on + strand, within Psyr_4707 at 5578.028 kb on + strand, within Psyr_4707 at 5578.028 kb on + strand, within Psyr_4707 at 5578.029 kb on - strand, within Psyr_4707 at 5578.029 kb on - strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.059 kb on + strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.060 kb on - strand, within Psyr_4707 at 5578.081 kb on - strand at 5578.170 kb on - strand at 5578.328 kb on + strand at 5578.413 kb on + strand, within Psyr_4708 at 5578.413 kb on + strand, within Psyr_4708 at 5578.414 kb on - strand, within Psyr_4708 at 5578.414 kb on - strand, within Psyr_4708 at 5578.536 kb on + strand, within Psyr_4708 at 5578.539 kb on + strand, within Psyr_4708 at 5578.564 kb on - strand, within Psyr_4708 at 5578.564 kb on - strand, within Psyr_4708 at 5578.564 kb on - strand, within Psyr_4708 at 5578.608 kb on + strand, within Psyr_4708 at 5578.608 kb on + strand, within Psyr_4708 at 5578.608 kb on + strand, within Psyr_4708 at 5578.608 kb on + strand, within Psyr_4708 at 5578.608 kb on + strand, within Psyr_4708 at 5578.608 kb on + strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.609 kb on - strand, within Psyr_4708 at 5578.822 kb on + strand, within Psyr_4708 at 5578.822 kb on + strand, within Psyr_4708 at 5578.823 kb on - strand, within Psyr_4708
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 5,577,030 + Psyr_4706 0.86 +0.8 5,577,030 + Psyr_4706 0.86 -0.4 5,577,288 + -2.8 5,577,288 + +1.6 5,577,288 + +0.4 5,577,288 + +0.6 5,577,288 + +0.2 5,577,288 + -2.3 5,577,288 + -0.2 5,577,288 + -2.9 5,577,288 + +0.5 5,577,288 + +2.1 5,577,288 + +2.0 5,577,288 + -0.2 5,577,288 + -1.1 5,577,288 + -0.1 5,577,288 + +0.3 5,577,288 + -1.5 5,577,288 + +0.5 5,577,288 + +0.4 5,577,288 + +0.2 5,577,288 + +0.6 5,577,288 + -0.7 5,577,288 + +0.1 5,577,288 + -0.2 5,577,289 - -1.7 5,577,289 - -0.7 5,577,289 - -0.4 5,577,289 - -0.2 5,577,289 - +0.2 5,577,289 - +0.1 5,577,289 - +1.1 5,577,289 - -0.9 5,577,289 - -0.3 5,577,329 + +0.7 5,577,330 - -1.9 5,577,383 - +0.7 5,577,466 - -0.7 5,577,631 - -1.6 5,577,676 + -1.7 5,577,676 + +1.2 5,577,677 - +0.8 5,577,677 - -0.2 5,577,725 + Psyr_4707 0.13 +0.4 5,577,742 + Psyr_4707 0.17 -0.5 5,577,742 + Psyr_4707 0.17 +0.7 5,577,742 + Psyr_4707 0.17 +1.8 5,577,742 + Psyr_4707 0.17 +0.4 5,577,742 + Psyr_4707 0.17 -0.2 5,577,742 + Psyr_4707 0.17 -0.1 5,577,743 - Psyr_4707 0.17 +0.5 5,577,743 - Psyr_4707 0.17 -2.0 5,577,744 + Psyr_4707 0.17 -0.3 5,577,745 - Psyr_4707 0.17 -0.3 5,577,863 + Psyr_4707 0.43 +0.5 5,577,863 + Psyr_4707 0.43 -0.1 5,577,863 + Psyr_4707 0.43 -1.3 5,577,864 - Psyr_4707 0.43 +0.0 5,577,947 - Psyr_4707 0.61 -0.6 5,578,028 + Psyr_4707 0.79 +0.4 5,578,028 + Psyr_4707 0.79 +1.8 5,578,028 + Psyr_4707 0.79 +0.4 5,578,028 + Psyr_4707 0.79 -0.7 5,578,029 - Psyr_4707 0.79 +0.6 5,578,029 - Psyr_4707 0.79 -0.5 5,578,059 + Psyr_4707 0.86 +0.4 5,578,059 + Psyr_4707 0.86 -0.2 5,578,059 + Psyr_4707 0.86 -0.8 5,578,059 + Psyr_4707 0.86 -0.2 5,578,059 + Psyr_4707 0.86 -1.6 5,578,059 + Psyr_4707 0.86 +0.7 5,578,059 + Psyr_4707 0.86 +3.0 5,578,059 + Psyr_4707 0.86 +0.6 5,578,060 - Psyr_4707 0.86 -0.0 5,578,060 - Psyr_4707 0.86 +0.5 5,578,060 - Psyr_4707 0.86 +0.6 5,578,060 - Psyr_4707 0.86 -1.1 5,578,060 - Psyr_4707 0.86 +1.2 5,578,060 - Psyr_4707 0.86 +0.5 5,578,060 - Psyr_4707 0.86 +1.0 5,578,060 - Psyr_4707 0.86 +1.0 5,578,060 - Psyr_4707 0.86 +1.6 5,578,081 - -1.2 5,578,170 - -0.9 5,578,328 + -1.7 5,578,413 + Psyr_4708 0.15 -1.3 5,578,413 + Psyr_4708 0.15 -0.8 5,578,414 - Psyr_4708 0.15 -0.9 5,578,414 - Psyr_4708 0.15 -0.4 5,578,536 + Psyr_4708 0.26 +0.4 5,578,539 + Psyr_4708 0.26 -1.0 5,578,564 - Psyr_4708 0.28 +0.1 5,578,564 - Psyr_4708 0.28 -1.4 5,578,564 - Psyr_4708 0.28 +0.5 5,578,608 + Psyr_4708 0.32 -1.1 5,578,608 + Psyr_4708 0.32 -1.6 5,578,608 + Psyr_4708 0.32 +2.1 5,578,608 + Psyr_4708 0.32 +0.1 5,578,608 + Psyr_4708 0.32 -0.5 5,578,608 + Psyr_4708 0.32 -0.2 5,578,609 - Psyr_4708 0.33 +0.8 5,578,609 - Psyr_4708 0.33 +0.2 5,578,609 - Psyr_4708 0.33 -1.5 5,578,609 - Psyr_4708 0.33 -0.6 5,578,609 - Psyr_4708 0.33 -0.3 5,578,609 - Psyr_4708 0.33 +1.3 5,578,609 - Psyr_4708 0.33 +1.4 5,578,609 - Psyr_4708 0.33 -0.0 5,578,609 - Psyr_4708 0.33 +0.5 5,578,609 - Psyr_4708 0.33 +0.3 5,578,609 - Psyr_4708 0.33 +1.4 5,578,609 - Psyr_4708 0.33 +0.7 5,578,822 + Psyr_4708 0.52 -0.4 5,578,822 + Psyr_4708 0.52 -0.3 5,578,823 - Psyr_4708 0.52 +0.7
Or see this region's nucleotide sequence