Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4402 and Psyr_4403 are separated by 24 nucleotides Psyr_4403 and Psyr_4404 are separated by 316 nucleotides
Psyr_4402: Psyr_4402 - [LSU ribosomal protein L11P]-lysine N-methyltransferase, at 5,263,765 to 5,264,643
_4402
Psyr_4403: Psyr_4403 - conserved hypothetical protein, at 5,264,668 to 5,265,990
_4403
Psyr_4404: Psyr_4404 - tRNA-U20-dihydrouridine synthase, at 5,266,307 to 5,267,320
_4404
Position (kb) 5264
5265
5266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5263.687 kb on - strand at 5263.687 kb on - strand at 5263.692 kb on + strand at 5263.692 kb on + strand at 5263.692 kb on + strand at 5263.692 kb on + strand at 5263.726 kb on + strand at 5263.726 kb on + strand at 5263.726 kb on + strand at 5263.727 kb on - strand at 5263.727 kb on - strand at 5263.727 kb on - strand at 5263.727 kb on - strand at 5263.729 kb on + strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.739 kb on + strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.740 kb on - strand at 5263.756 kb on + strand at 5263.756 kb on + strand at 5263.756 kb on + strand at 5263.816 kb on + strand at 5263.817 kb on - strand at 5264.333 kb on + strand, within Psyr_4402 at 5264.333 kb on + strand, within Psyr_4402 at 5264.333 kb on + strand, within Psyr_4402 at 5264.333 kb on + strand, within Psyr_4402 at 5264.333 kb on + strand, within Psyr_4402 at 5264.334 kb on - strand, within Psyr_4402 at 5264.401 kb on + strand, within Psyr_4402 at 5264.401 kb on + strand, within Psyr_4402 at 5264.402 kb on - strand, within Psyr_4402 at 5264.402 kb on - strand, within Psyr_4402 at 5264.570 kb on - strand at 5265.144 kb on + strand, within Psyr_4403 at 5265.480 kb on - strand, within Psyr_4403 at 5265.545 kb on + strand, within Psyr_4403 at 5265.546 kb on - strand at 5265.546 kb on - strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.574 kb on + strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.575 kb on - strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.760 kb on + strand, within Psyr_4403 at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.961 kb on + strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5265.962 kb on - strand at 5266.049 kb on + strand at 5266.049 kb on + strand at 5266.300 kb on + strand at 5266.300 kb on + strand at 5266.300 kb on + strand at 5266.300 kb on + strand at 5266.306 kb on + strand at 5266.306 kb on + strand at 5266.306 kb on + strand at 5266.331 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.333 kb on + strand at 5266.716 kb on + strand, within Psyr_4404 at 5266.977 kb on + strand, within Psyr_4404
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 5,263,687 - -0.7 5,263,687 - +0.2 5,263,692 + -3.0 5,263,692 + +2.0 5,263,692 + +0.1 5,263,692 + -0.5 5,263,726 + +0.0 5,263,726 + +1.1 5,263,726 + +0.6 5,263,727 - -0.5 5,263,727 - +2.1 5,263,727 - +1.7 5,263,727 - -0.2 5,263,729 + +0.7 5,263,739 + -1.3 5,263,739 + -1.1 5,263,739 + -0.1 5,263,739 + -1.2 5,263,740 - -0.4 5,263,740 - -0.1 5,263,740 - +0.6 5,263,740 - -1.3 5,263,740 - +0.3 5,263,740 - +0.2 5,263,740 - -0.5 5,263,740 - -0.8 5,263,756 + -0.9 5,263,756 + +0.9 5,263,756 + +0.4 5,263,816 + -0.5 5,263,817 - +2.2 5,264,333 + Psyr_4402 0.65 -0.8 5,264,333 + Psyr_4402 0.65 -0.4 5,264,333 + Psyr_4402 0.65 -0.6 5,264,333 + Psyr_4402 0.65 -0.3 5,264,333 + Psyr_4402 0.65 +0.1 5,264,334 - Psyr_4402 0.65 -0.0 5,264,401 + Psyr_4402 0.72 +0.7 5,264,401 + Psyr_4402 0.72 +1.6 5,264,402 - Psyr_4402 0.72 -0.5 5,264,402 - Psyr_4402 0.72 -0.8 5,264,570 - +0.2 5,265,144 + Psyr_4403 0.36 -2.5 5,265,480 - Psyr_4403 0.61 -0.2 5,265,545 + Psyr_4403 0.66 +0.4 5,265,546 - +1.7 5,265,546 - Psyr_4403 0.66 +0.7 5,265,574 + Psyr_4403 0.68 +0.7 5,265,574 + Psyr_4403 0.68 +0.4 5,265,574 + Psyr_4403 0.68 +0.0 5,265,574 + Psyr_4403 0.68 -1.1 5,265,575 - Psyr_4403 0.69 +1.4 5,265,575 - Psyr_4403 0.69 +0.1 5,265,575 - Psyr_4403 0.69 -0.8 5,265,575 - Psyr_4403 0.69 -0.8 5,265,760 + Psyr_4403 0.83 -1.5 5,265,760 + Psyr_4403 0.83 +1.3 5,265,760 + Psyr_4403 0.83 -1.5 5,265,961 + -1.6 5,265,961 + -1.1 5,265,961 + -0.0 5,265,961 + -2.5 5,265,961 + +2.0 5,265,961 + +0.3 5,265,961 + +0.1 5,265,962 - -0.4 5,265,962 - -0.7 5,265,962 - +0.4 5,265,962 - -0.1 5,265,962 - +0.5 5,266,049 + +1.5 5,266,049 + -2.1 5,266,300 + +0.2 5,266,300 + +3.3 5,266,300 + +0.2 5,266,300 + -0.9 5,266,306 + +0.4 5,266,306 + -0.4 5,266,306 + +0.0 5,266,331 + -0.8 5,266,333 + -2.7 5,266,333 + -0.6 5,266,333 + -1.6 5,266,333 + -0.2 5,266,333 + -1.1 5,266,333 + -1.4 5,266,333 + +0.0 5,266,333 + -1.6 5,266,333 + -0.4 5,266,333 + +0.5 5,266,333 + +1.0 5,266,333 + -0.1 5,266,333 + +0.5 5,266,333 + +0.4 5,266,333 + -1.1 5,266,333 + -1.1 5,266,333 + -0.6 5,266,333 + -0.3 5,266,333 + -0.6 5,266,333 + -0.3 5,266,333 + +0.7 5,266,333 + -1.8 5,266,333 + +1.0 5,266,333 + -1.5 5,266,333 + +1.7 5,266,333 + -0.5 5,266,333 + -0.6 5,266,333 + +1.1 5,266,333 + -0.1 5,266,333 + +0.5 5,266,333 + -1.6 5,266,333 + -1.0 5,266,333 + -0.8 5,266,333 + -0.4 5,266,333 + -1.2 5,266,716 + Psyr_4404 0.40 +1.2 5,266,977 + Psyr_4404 0.66 -1.3
Or see this region's nucleotide sequence