Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4025

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4024 and Psyr_4025 overlap by 4 nucleotidesPsyr_4025 and Psyr_4026 are separated by 50 nucleotides Psyr_4024: Psyr_4024 - conserved hypothetical protein, at 4,792,033 to 4,793,250 _4024 Psyr_4025: Psyr_4025 - ATPase, at 4,793,247 to 4,794,287 _4025 Psyr_4026: Psyr_4026 - Protein of unknown function DUF58, at 4,794,338 to 4,795,627 _4026 Position (kb) 4793 4794 4795Strain fitness (log2 ratio) -2 -1 0 1 2at 4792.438 kb on + strand, within Psyr_4024at 4792.438 kb on + strand, within Psyr_4024at 4792.439 kb on - strand, within Psyr_4024at 4792.538 kb on + strand, within Psyr_4024at 4792.538 kb on + strand, within Psyr_4024at 4792.539 kb on - strand, within Psyr_4024at 4792.539 kb on - strand, within Psyr_4024at 4792.565 kb on - strand, within Psyr_4024at 4792.565 kb on - strand, within Psyr_4024at 4792.592 kb on - strand, within Psyr_4024at 4792.592 kb on - strand, within Psyr_4024at 4792.685 kb on + strand, within Psyr_4024at 4792.685 kb on + strand, within Psyr_4024at 4792.756 kb on + strand, within Psyr_4024at 4792.756 kb on + strand, within Psyr_4024at 4792.757 kb on - strand, within Psyr_4024at 4792.781 kb on - strand, within Psyr_4024at 4792.858 kb on + strand, within Psyr_4024at 4792.858 kb on + strand, within Psyr_4024at 4792.859 kb on - strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.051 kb on + strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.052 kb on - strand, within Psyr_4024at 4793.216 kb on + strandat 4793.217 kb on - strandat 4793.217 kb on - strandat 4793.541 kb on - strand, within Psyr_4025at 4793.583 kb on + strand, within Psyr_4025at 4793.583 kb on + strand, within Psyr_4025at 4793.584 kb on - strand, within Psyr_4025at 4793.584 kb on - strand, within Psyr_4025at 4793.584 kb on - strand, within Psyr_4025at 4793.799 kb on + strand, within Psyr_4025at 4793.800 kb on - strand, within Psyr_4025at 4794.018 kb on + strand, within Psyr_4025at 4794.764 kb on + strand, within Psyr_4026at 4794.841 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.112 kb on + strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.113 kb on - strand, within Psyr_4026at 4795.145 kb on - strand, within Psyr_4026at 4795.229 kb on + strand, within Psyr_4026at 4795.229 kb on + strand, within Psyr_4026at 4795.229 kb on + strand, within Psyr_4026at 4795.262 kb on + strand, within Psyr_4026at 4795.262 kb on + strand, within Psyr_4026at 4795.262 kb on + strand, within Psyr_4026at 4795.263 kb on - strand, within Psyr_4026at 4795.263 kb on - strand, within Psyr_4026

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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4,792,438 + Psyr_4024 0.33 +0.2
4,792,438 + Psyr_4024 0.33 +1.5
4,792,439 - Psyr_4024 0.33 +0.1
4,792,538 + Psyr_4024 0.41 -0.7
4,792,538 + Psyr_4024 0.41 -1.7
4,792,539 - Psyr_4024 0.42 +0.3
4,792,539 - Psyr_4024 0.42 +0.9
4,792,565 - Psyr_4024 0.44 +0.9
4,792,565 - Psyr_4024 0.44 -0.0
4,792,592 - Psyr_4024 0.46 -0.7
4,792,592 - Psyr_4024 0.46 -0.1
4,792,685 + Psyr_4024 0.54 +0.2
4,792,685 + Psyr_4024 0.54 -0.1
4,792,756 + Psyr_4024 0.59 -0.4
4,792,756 + Psyr_4024 0.59 +1.8
4,792,757 - Psyr_4024 0.59 +1.7
4,792,781 - Psyr_4024 0.61 +1.4
4,792,858 + Psyr_4024 0.68 +0.3
4,792,858 + Psyr_4024 0.68 -1.3
4,792,859 - Psyr_4024 0.68 -0.0
4,793,051 + Psyr_4024 0.84 +1.1
4,793,051 + Psyr_4024 0.84 +0.3
4,793,051 + Psyr_4024 0.84 +1.3
4,793,051 + Psyr_4024 0.84 -1.2
4,793,051 + Psyr_4024 0.84 -0.7
4,793,051 + Psyr_4024 0.84 +0.8
4,793,051 + Psyr_4024 0.84 +0.3
4,793,051 + Psyr_4024 0.84 +0.3
4,793,051 + Psyr_4024 0.84 +0.4
4,793,051 + Psyr_4024 0.84 -0.5
4,793,052 - Psyr_4024 0.84 +0.3
4,793,052 - Psyr_4024 0.84 -0.8
4,793,052 - Psyr_4024 0.84 +0.5
4,793,052 - Psyr_4024 0.84 -0.5
4,793,052 - Psyr_4024 0.84 -0.2
4,793,216 + -2.2
4,793,217 - -0.1
4,793,217 - +0.2
4,793,541 - Psyr_4025 0.28 +1.3
4,793,583 + Psyr_4025 0.32 -0.2
4,793,583 + Psyr_4025 0.32 -1.7
4,793,584 - Psyr_4025 0.32 +0.1
4,793,584 - Psyr_4025 0.32 -1.1
4,793,584 - Psyr_4025 0.32 -1.7
4,793,799 + Psyr_4025 0.53 -1.2
4,793,800 - Psyr_4025 0.53 -1.4
4,794,018 + Psyr_4025 0.74 -0.4
4,794,764 + Psyr_4026 0.33 +0.1
4,794,841 + Psyr_4026 0.39 -1.5
4,795,112 + Psyr_4026 0.60 +0.8
4,795,112 + Psyr_4026 0.60 -0.7
4,795,112 + Psyr_4026 0.60 +0.3
4,795,112 + Psyr_4026 0.60 +1.0
4,795,112 + Psyr_4026 0.60 +0.3
4,795,112 + Psyr_4026 0.60 -1.4
4,795,112 + Psyr_4026 0.60 +1.3
4,795,112 + Psyr_4026 0.60 -0.2
4,795,112 + Psyr_4026 0.60 -1.7
4,795,112 + Psyr_4026 0.60 +0.3
4,795,113 - Psyr_4026 0.60 +1.5
4,795,113 - Psyr_4026 0.60 -2.4
4,795,113 - Psyr_4026 0.60 +0.3
4,795,113 - Psyr_4026 0.60 +0.2
4,795,113 - Psyr_4026 0.60 +1.8
4,795,113 - Psyr_4026 0.60 +0.3
4,795,113 - Psyr_4026 0.60 +0.8
4,795,113 - Psyr_4026 0.60 -0.3
4,795,113 - Psyr_4026 0.60 +0.4
4,795,113 - Psyr_4026 0.60 -1.1
4,795,113 - Psyr_4026 0.60 +1.8
4,795,113 - Psyr_4026 0.60 -0.1
4,795,113 - Psyr_4026 0.60 -0.2
4,795,113 - Psyr_4026 0.60 +2.3
4,795,145 - Psyr_4026 0.63 -0.1
4,795,229 + Psyr_4026 0.69 -0.2
4,795,229 + Psyr_4026 0.69 -0.5
4,795,229 + Psyr_4026 0.69 +0.0
4,795,262 + Psyr_4026 0.72 -2.1
4,795,262 + Psyr_4026 0.72 -1.8
4,795,262 + Psyr_4026 0.72 -1.3
4,795,263 - Psyr_4026 0.72 +1.1
4,795,263 - Psyr_4026 0.72 +0.2

Or see this region's nucleotide sequence