Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3998

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3997 and Psyr_3998 overlap by 4 nucleotidesPsyr_3998 and Psyr_3999 are separated by 215 nucleotides Psyr_3997: Psyr_3997 - Heat shock protein Hsp70, at 4,759,883 to 4,761,577 _3997 Psyr_3998: Psyr_3998 - Heat shock protein DnaJ, N-terminal, at 4,761,574 to 4,763,121 _3998 Psyr_3999: Psyr_3999 - General substrate transporter:Major facilitator superfamily, at 4,763,337 to 4,764,662 _3999 Position (kb) 4761 4762 4763 4764Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4760.631 kb on + strand, within Psyr_3997at 4760.632 kb on - strand, within Psyr_3997at 4760.669 kb on - strand, within Psyr_3997at 4760.669 kb on - strand, within Psyr_3997at 4760.963 kb on + strand, within Psyr_3997at 4760.964 kb on - strand, within Psyr_3997at 4760.964 kb on - strand, within Psyr_3997at 4761.005 kb on + strand, within Psyr_3997at 4761.020 kb on + strand, within Psyr_3997at 4761.020 kb on + strand, within Psyr_3997at 4761.020 kb on + strand, within Psyr_3997at 4761.020 kb on + strand, within Psyr_3997at 4761.020 kb on + strand, within Psyr_3997at 4761.021 kb on - strand, within Psyr_3997at 4761.021 kb on - strand, within Psyr_3997at 4761.106 kb on + strand, within Psyr_3997at 4761.107 kb on - strand, within Psyr_3997at 4761.107 kb on - strand, within Psyr_3997at 4761.136 kb on + strand, within Psyr_3997at 4761.136 kb on + strand, within Psyr_3997at 4761.223 kb on + strand, within Psyr_3997at 4761.223 kb on + strand, within Psyr_3997at 4761.224 kb on - strand, within Psyr_3997at 4761.224 kb on - strand, within Psyr_3997at 4761.227 kb on + strand, within Psyr_3997at 4761.228 kb on - strand, within Psyr_3997at 4761.236 kb on - strand, within Psyr_3997at 4761.333 kb on + strand, within Psyr_3997at 4761.333 kb on + strand, within Psyr_3997at 4761.333 kb on + strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.334 kb on - strand, within Psyr_3997at 4761.351 kb on + strand, within Psyr_3997at 4761.351 kb on + strand, within Psyr_3997at 4761.426 kb on - strandat 4761.426 kb on - strandat 4761.580 kb on + strandat 4761.580 kb on + strandat 4761.580 kb on + strandat 4761.581 kb on - strandat 4761.581 kb on - strandat 4761.581 kb on - strandat 4761.581 kb on - strandat 4761.581 kb on - strandat 4761.593 kb on + strandat 4761.593 kb on + strandat 4761.594 kb on - strandat 4761.594 kb on - strandat 4761.640 kb on + strandat 4761.640 kb on + strandat 4761.641 kb on - strandat 4761.709 kb on + strandat 4762.052 kb on - strand, within Psyr_3998at 4762.052 kb on - strand, within Psyr_3998at 4762.280 kb on + strand, within Psyr_3998at 4762.367 kb on - strand, within Psyr_3998at 4762.516 kb on - strand, within Psyr_3998at 4762.633 kb on + strand, within Psyr_3998at 4762.633 kb on + strand, within Psyr_3998at 4762.634 kb on - strand, within Psyr_3998at 4762.693 kb on + strand, within Psyr_3998at 4762.694 kb on - strand, within Psyr_3998at 4762.764 kb on + strand, within Psyr_3998at 4762.765 kb on - strand, within Psyr_3998at 4762.765 kb on - strand, within Psyr_3998at 4762.772 kb on + strand, within Psyr_3998at 4762.772 kb on + strand, within Psyr_3998at 4762.773 kb on - strand, within Psyr_3998at 4762.829 kb on + strand, within Psyr_3998at 4762.945 kb on + strand, within Psyr_3998at 4762.991 kb on - strandat 4762.991 kb on - strandat 4763.036 kb on - strandat 4763.107 kb on - strandat 4763.205 kb on + strandat 4763.206 kb on - strandat 4763.206 kb on - strandat 4763.243 kb on + strandat 4763.243 kb on + strandat 4763.244 kb on - strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.278 kb on + strandat 4763.279 kb on - strandat 4763.279 kb on - strandat 4763.279 kb on - strandat 4763.279 kb on - strandat 4763.283 kb on - strandat 4763.283 kb on - strandat 4763.318 kb on - strandat 4763.455 kb on - strandat 4763.455 kb on - strandat 4763.463 kb on + strandat 4763.470 kb on - strand, within Psyr_3999at 4763.487 kb on + strand, within Psyr_3999at 4763.488 kb on - strand, within Psyr_3999at 4763.579 kb on + strand, within Psyr_3999at 4763.580 kb on - strand, within Psyr_3999at 4763.605 kb on - strand, within Psyr_3999at 4763.605 kb on - strand, within Psyr_3999at 4763.613 kb on + strand, within Psyr_3999at 4763.614 kb on - strand, within Psyr_3999at 4763.614 kb on - strand, within Psyr_3999at 4763.614 kb on - strand, within Psyr_3999at 4763.614 kb on - strand, within Psyr_3999at 4763.694 kb on + strand, within Psyr_3999at 4763.790 kb on + strand, within Psyr_3999at 4763.790 kb on + strand, within Psyr_3999at 4763.791 kb on - strand, within Psyr_3999at 4763.791 kb on - strand, within Psyr_3999at 4763.791 kb on - strand, within Psyr_3999at 4763.791 kb on - strand, within Psyr_3999at 4763.791 kb on - strand, within Psyr_3999at 4763.925 kb on + strand, within Psyr_3999at 4763.926 kb on - strandat 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.926 kb on - strand, within Psyr_3999at 4763.942 kb on + strand, within Psyr_3999at 4763.943 kb on - strand, within Psyr_3999

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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4,760,631 + Psyr_3997 0.44 -0.3
4,760,632 - Psyr_3997 0.44 +0.2
4,760,669 - Psyr_3997 0.46 +0.2
4,760,669 - Psyr_3997 0.46 +0.1
4,760,963 + Psyr_3997 0.64 -2.2
4,760,964 - Psyr_3997 0.64 -0.8
4,760,964 - Psyr_3997 0.64 -0.5
4,761,005 + Psyr_3997 0.66 -1.5
4,761,020 + Psyr_3997 0.67 +0.9
4,761,020 + Psyr_3997 0.67 +2.7
4,761,020 + Psyr_3997 0.67 +0.9
4,761,020 + Psyr_3997 0.67 +0.4
4,761,020 + Psyr_3997 0.67 +0.7
4,761,021 - Psyr_3997 0.67 +0.5
4,761,021 - Psyr_3997 0.67 +0.2
4,761,106 + Psyr_3997 0.72 -0.1
4,761,107 - Psyr_3997 0.72 -0.6
4,761,107 - Psyr_3997 0.72 +0.2
4,761,136 + Psyr_3997 0.74 -0.2
4,761,136 + Psyr_3997 0.74 +1.5
4,761,223 + Psyr_3997 0.79 +1.9
4,761,223 + Psyr_3997 0.79 +0.3
4,761,224 - Psyr_3997 0.79 +1.5
4,761,224 - Psyr_3997 0.79 +0.9
4,761,227 + Psyr_3997 0.79 +0.4
4,761,228 - Psyr_3997 0.79 +0.3
4,761,236 - Psyr_3997 0.80 -1.1
4,761,333 + Psyr_3997 0.86 -0.4
4,761,333 + Psyr_3997 0.86 +0.3
4,761,333 + Psyr_3997 0.86 +1.7
4,761,334 - Psyr_3997 0.86 +0.7
4,761,334 - Psyr_3997 0.86 -1.2
4,761,334 - Psyr_3997 0.86 +0.3
4,761,334 - Psyr_3997 0.86 +1.2
4,761,334 - Psyr_3997 0.86 -0.1
4,761,351 + Psyr_3997 0.87 -0.5
4,761,351 + Psyr_3997 0.87 -1.6
4,761,426 - +0.1
4,761,426 - -0.4
4,761,580 + +2.7
4,761,580 + -0.1
4,761,580 + +0.0
4,761,581 - -0.4
4,761,581 - +4.1
4,761,581 - -0.1
4,761,581 - -1.6
4,761,581 - -1.8
4,761,593 + +0.8
4,761,593 + -0.1
4,761,594 - -1.5
4,761,594 - -0.5
4,761,640 + +0.8
4,761,640 + -0.5
4,761,641 - -0.1
4,761,709 + -1.3
4,762,052 - Psyr_3998 0.31 -0.4
4,762,052 - Psyr_3998 0.31 -0.9
4,762,280 + Psyr_3998 0.46 +0.3
4,762,367 - Psyr_3998 0.51 -0.7
4,762,516 - Psyr_3998 0.61 -0.3
4,762,633 + Psyr_3998 0.68 -0.9
4,762,633 + Psyr_3998 0.68 -0.3
4,762,634 - Psyr_3998 0.68 -0.4
4,762,693 + Psyr_3998 0.72 -0.5
4,762,694 - Psyr_3998 0.72 +0.1
4,762,764 + Psyr_3998 0.77 -1.0
4,762,765 - Psyr_3998 0.77 -0.7
4,762,765 - Psyr_3998 0.77 +1.1
4,762,772 + Psyr_3998 0.77 -0.2
4,762,772 + Psyr_3998 0.77 -0.7
4,762,773 - Psyr_3998 0.77 -0.4
4,762,829 + Psyr_3998 0.81 +0.3
4,762,945 + Psyr_3998 0.89 -1.8
4,762,991 - -0.7
4,762,991 - -0.9
4,763,036 - -1.4
4,763,107 - +0.3
4,763,205 + +0.1
4,763,206 - +0.3
4,763,206 - +2.1
4,763,243 + -0.4
4,763,243 + -0.7
4,763,244 - +1.5
4,763,278 + +0.2
4,763,278 + -1.9
4,763,278 + +0.7
4,763,278 + +0.3
4,763,278 + +0.4
4,763,278 + +1.9
4,763,278 + +1.3
4,763,278 + -0.7
4,763,278 + +1.0
4,763,278 + +0.7
4,763,278 + -1.2
4,763,279 - -2.1
4,763,279 - -0.3
4,763,279 - -0.4
4,763,279 - +0.4
4,763,283 - +0.0
4,763,283 - +0.7
4,763,318 - +0.9
4,763,455 - -1.7
4,763,455 - +0.7
4,763,463 + -1.4
4,763,470 - Psyr_3999 0.10 -0.1
4,763,487 + Psyr_3999 0.11 -2.6
4,763,488 - Psyr_3999 0.11 +0.3
4,763,579 + Psyr_3999 0.18 -0.5
4,763,580 - Psyr_3999 0.18 +0.5
4,763,605 - Psyr_3999 0.20 +0.5
4,763,605 - Psyr_3999 0.20 -0.1
4,763,613 + Psyr_3999 0.21 +0.5
4,763,614 - Psyr_3999 0.21 -0.8
4,763,614 - Psyr_3999 0.21 -0.1
4,763,614 - Psyr_3999 0.21 +1.5
4,763,614 - Psyr_3999 0.21 +0.3
4,763,694 + Psyr_3999 0.27 -0.4
4,763,790 + Psyr_3999 0.34 +0.5
4,763,790 + Psyr_3999 0.34 -1.4
4,763,791 - Psyr_3999 0.34 +1.1
4,763,791 - Psyr_3999 0.34 -0.4
4,763,791 - Psyr_3999 0.34 -0.1
4,763,791 - Psyr_3999 0.34 +3.8
4,763,791 - Psyr_3999 0.34 +0.3
4,763,925 + Psyr_3999 0.44 +1.1
4,763,926 - -0.1
4,763,926 - Psyr_3999 0.44 -0.1
4,763,926 - Psyr_3999 0.44 -0.5
4,763,926 - Psyr_3999 0.44 -0.2
4,763,942 + Psyr_3999 0.46 +2.1
4,763,943 - Psyr_3999 0.46 -0.2

Or see this region's nucleotide sequence