Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3977

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3975 and Psyr_3976 are separated by 11 nucleotidesPsyr_3976 and Psyr_3977 are separated by 109 nucleotidesPsyr_3977 and Psyr_3978 are separated by 35 nucleotides Psyr_3975: Psyr_3975 - conserved hypothetical protein, at 4,722,629 to 4,723,354 _3975 Psyr_3976: Psyr_3976 - conserved hypothetical protein, at 4,723,366 to 4,723,983 _3976 Psyr_3977: Psyr_3977 - Urea amidolyase-related protein, at 4,724,093 to 4,728,559 _3977 Psyr_3978: Psyr_3978 - Amidase, at 4,728,595 to 4,730,409 _3978 Position (kb) 4724 4725 4726 4727 4728 4729Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4723.154 kb on + strand, within Psyr_3975at 4723.154 kb on + strand, within Psyr_3975at 4723.154 kb on + strand, within Psyr_3975at 4723.154 kb on + strand, within Psyr_3975at 4723.155 kb on - strand, within Psyr_3975at 4723.155 kb on - strand, within Psyr_3975at 4723.155 kb on - strand, within Psyr_3975at 4723.155 kb on - strand, within Psyr_3975at 4723.155 kb on - strand, within Psyr_3975at 4723.167 kb on - strand, within Psyr_3975at 4723.233 kb on - strand, within Psyr_3975at 4723.565 kb on - strand, within Psyr_3976at 4723.565 kb on - strand, within Psyr_3976at 4723.709 kb on - strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.732 kb on + strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.733 kb on - strand, within Psyr_3976at 4723.809 kb on - strand, within Psyr_3976at 4723.809 kb on - strand, within Psyr_3976at 4723.848 kb on + strand, within Psyr_3976at 4723.848 kb on + strand, within Psyr_3976at 4723.867 kb on + strand, within Psyr_3976at 4723.867 kb on + strand, within Psyr_3976at 4723.867 kb on + strand, within Psyr_3976at 4723.867 kb on + strand, within Psyr_3976at 4723.867 kb on + strand, within Psyr_3976at 4723.868 kb on - strand, within Psyr_3976at 4724.020 kb on + strandat 4724.020 kb on + strandat 4724.021 kb on - strandat 4724.021 kb on - strandat 4724.032 kb on + strandat 4724.186 kb on + strandat 4724.270 kb on + strandat 4724.270 kb on + strandat 4724.271 kb on - strandat 4724.271 kb on - strandat 4724.693 kb on + strand, within Psyr_3977at 4724.693 kb on + strand, within Psyr_3977at 4724.694 kb on - strand, within Psyr_3977at 4724.694 kb on - strand, within Psyr_3977at 4724.694 kb on - strand, within Psyr_3977at 4724.892 kb on - strand, within Psyr_3977at 4724.945 kb on + strand, within Psyr_3977at 4724.946 kb on - strand, within Psyr_3977at 4724.946 kb on - strand, within Psyr_3977at 4724.946 kb on - strand, within Psyr_3977at 4725.245 kb on + strand, within Psyr_3977at 4725.246 kb on - strand, within Psyr_3977at 4725.342 kb on - strand, within Psyr_3977at 4725.366 kb on - strand, within Psyr_3977at 4725.622 kb on + strand, within Psyr_3977at 4725.622 kb on + strand, within Psyr_3977at 4725.623 kb on - strand, within Psyr_3977at 4725.783 kb on + strand, within Psyr_3977at 4725.783 kb on + strand, within Psyr_3977at 4725.783 kb on + strand, within Psyr_3977at 4725.784 kb on - strand, within Psyr_3977at 4725.784 kb on - strand, within Psyr_3977at 4725.791 kb on + strand, within Psyr_3977at 4725.791 kb on + strand, within Psyr_3977at 4725.792 kb on - strand, within Psyr_3977at 4725.792 kb on - strand, within Psyr_3977at 4725.827 kb on + strand, within Psyr_3977at 4725.844 kb on + strand, within Psyr_3977at 4725.845 kb on - strand, within Psyr_3977at 4725.845 kb on - strand, within Psyr_3977at 4725.845 kb on - strand, within Psyr_3977at 4726.002 kb on - strand, within Psyr_3977at 4726.025 kb on + strand, within Psyr_3977at 4726.040 kb on + strand, within Psyr_3977at 4726.041 kb on - strand, within Psyr_3977at 4726.188 kb on - strand, within Psyr_3977at 4726.406 kb on - strand, within Psyr_3977at 4726.406 kb on - strand, within Psyr_3977at 4726.487 kb on - strand, within Psyr_3977at 4726.514 kb on - strand, within Psyr_3977at 4726.612 kb on + strand, within Psyr_3977at 4726.639 kb on + strand, within Psyr_3977at 4726.640 kb on - strand, within Psyr_3977at 4726.745 kb on + strand, within Psyr_3977at 4726.745 kb on + strand, within Psyr_3977at 4726.745 kb on + strand, within Psyr_3977at 4726.745 kb on + strand, within Psyr_3977at 4726.745 kb on + strand, within Psyr_3977at 4726.745 kb on + strand, within Psyr_3977at 4726.747 kb on + strand, within Psyr_3977at 4726.747 kb on + strand, within Psyr_3977at 4726.961 kb on + strand, within Psyr_3977at 4726.961 kb on + strand, within Psyr_3977at 4726.961 kb on + strand, within Psyr_3977at 4726.961 kb on + strand, within Psyr_3977at 4726.961 kb on + strand, within Psyr_3977at 4726.961 kb on + strand, within Psyr_3977at 4726.961 kb on + strand, within Psyr_3977at 4726.962 kb on - strand, within Psyr_3977at 4726.962 kb on - strand, within Psyr_3977at 4726.962 kb on - strand, within Psyr_3977at 4726.962 kb on - strand, within Psyr_3977at 4726.963 kb on + strand, within Psyr_3977at 4726.963 kb on + strand, within Psyr_3977at 4726.964 kb on - strand, within Psyr_3977at 4726.964 kb on - strand, within Psyr_3977at 4726.990 kb on + strand, within Psyr_3977at 4726.991 kb on - strand, within Psyr_3977at 4726.991 kb on - strand, within Psyr_3977at 4727.070 kb on - strand, within Psyr_3977at 4727.070 kb on - strand, within Psyr_3977at 4727.070 kb on - strand, within Psyr_3977at 4727.197 kb on + strand, within Psyr_3977at 4727.279 kb on - strand, within Psyr_3977at 4727.675 kb on + strand, within Psyr_3977at 4727.676 kb on - strand, within Psyr_3977at 4727.773 kb on + strand, within Psyr_3977at 4727.773 kb on + strand, within Psyr_3977at 4727.773 kb on + strand, within Psyr_3977at 4727.774 kb on - strand, within Psyr_3977at 4727.792 kb on + strand, within Psyr_3977at 4727.792 kb on + strand, within Psyr_3977at 4727.793 kb on - strand, within Psyr_3977at 4727.819 kb on + strand, within Psyr_3977at 4727.879 kb on + strand, within Psyr_3977at 4727.879 kb on + strand, within Psyr_3977at 4727.879 kb on + strand, within Psyr_3977at 4727.879 kb on + strand, within Psyr_3977at 4727.880 kb on - strand, within Psyr_3977at 4727.880 kb on - strand, within Psyr_3977at 4727.880 kb on - strand, within Psyr_3977at 4727.880 kb on - strand, within Psyr_3977at 4727.933 kb on + strand, within Psyr_3977at 4727.933 kb on + strand, within Psyr_3977at 4727.933 kb on + strand, within Psyr_3977at 4727.933 kb on + strand, within Psyr_3977at 4727.934 kb on - strand, within Psyr_3977at 4727.934 kb on - strand, within Psyr_3977at 4727.934 kb on - strand, within Psyr_3977at 4727.934 kb on - strand, within Psyr_3977at 4727.945 kb on + strand, within Psyr_3977at 4727.945 kb on + strand, within Psyr_3977at 4727.945 kb on + strand, within Psyr_3977at 4728.173 kb on + strandat 4728.650 kb on - strandat 4728.843 kb on + strand, within Psyr_3978at 4728.844 kb on - strand, within Psyr_3978at 4728.886 kb on + strand, within Psyr_3978at 4728.892 kb on + strand, within Psyr_3978at 4729.010 kb on - strand, within Psyr_3978at 4729.205 kb on + strand, within Psyr_3978at 4729.274 kb on + strand, within Psyr_3978at 4729.313 kb on - strand, within Psyr_3978at 4729.313 kb on - strand, within Psyr_3978at 4729.525 kb on + strand, within Psyr_3978at 4729.525 kb on + strand, within Psyr_3978at 4729.526 kb on - strand, within Psyr_3978at 4729.526 kb on - strand, within Psyr_3978at 4729.526 kb on - strand, within Psyr_3978at 4729.553 kb on - strand, within Psyr_3978

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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4,723,154 + Psyr_3975 0.72 -0.7
4,723,154 + Psyr_3975 0.72 +0.4
4,723,154 + Psyr_3975 0.72 +0.0
4,723,154 + Psyr_3975 0.72 +3.1
4,723,155 - Psyr_3975 0.72 -1.0
4,723,155 - Psyr_3975 0.72 -1.9
4,723,155 - Psyr_3975 0.72 +0.5
4,723,155 - Psyr_3975 0.72 +2.7
4,723,155 - Psyr_3975 0.72 +1.9
4,723,167 - Psyr_3975 0.74 +0.3
4,723,233 - Psyr_3975 0.83 +0.7
4,723,565 - Psyr_3976 0.32 +3.1
4,723,565 - Psyr_3976 0.32 -0.2
4,723,709 - Psyr_3976 0.56 -0.4
4,723,732 + Psyr_3976 0.59 -0.4
4,723,732 + Psyr_3976 0.59 +2.1
4,723,732 + Psyr_3976 0.59 +1.8
4,723,732 + Psyr_3976 0.59 +0.9
4,723,732 + Psyr_3976 0.59 -0.1
4,723,732 + Psyr_3976 0.59 +1.7
4,723,732 + Psyr_3976 0.59 -2.8
4,723,732 + Psyr_3976 0.59 -2.8
4,723,732 + Psyr_3976 0.59 -0.9
4,723,732 + Psyr_3976 0.59 -2.3
4,723,732 + Psyr_3976 0.59 -1.4
4,723,733 - Psyr_3976 0.59 +0.4
4,723,733 - Psyr_3976 0.59 -1.9
4,723,733 - Psyr_3976 0.59 +1.5
4,723,733 - Psyr_3976 0.59 +0.3
4,723,733 - Psyr_3976 0.59 -0.8
4,723,733 - Psyr_3976 0.59 +0.4
4,723,733 - Psyr_3976 0.59 +0.8
4,723,733 - Psyr_3976 0.59 +0.3
4,723,733 - Psyr_3976 0.59 +0.9
4,723,733 - Psyr_3976 0.59 +0.5
4,723,733 - Psyr_3976 0.59 -1.9
4,723,809 - Psyr_3976 0.72 -0.6
4,723,809 - Psyr_3976 0.72 -0.9
4,723,848 + Psyr_3976 0.78 +1.5
4,723,848 + Psyr_3976 0.78 +0.2
4,723,867 + Psyr_3976 0.81 +0.5
4,723,867 + Psyr_3976 0.81 +0.4
4,723,867 + Psyr_3976 0.81 -0.2
4,723,867 + Psyr_3976 0.81 +0.3
4,723,867 + Psyr_3976 0.81 +0.4
4,723,868 - Psyr_3976 0.81 +0.4
4,724,020 + +1.1
4,724,020 + -0.4
4,724,021 - +0.4
4,724,021 - -0.4
4,724,032 + +0.3
4,724,186 + -1.1
4,724,270 + +0.2
4,724,270 + +0.5
4,724,271 - +2.5
4,724,271 - -0.2
4,724,693 + Psyr_3977 0.13 -1.4
4,724,693 + Psyr_3977 0.13 -1.0
4,724,694 - Psyr_3977 0.13 -0.4
4,724,694 - Psyr_3977 0.13 +2.5
4,724,694 - Psyr_3977 0.13 -0.2
4,724,892 - Psyr_3977 0.18 +0.3
4,724,945 + Psyr_3977 0.19 -1.4
4,724,946 - Psyr_3977 0.19 -0.1
4,724,946 - Psyr_3977 0.19 +1.3
4,724,946 - Psyr_3977 0.19 -1.7
4,725,245 + Psyr_3977 0.26 -0.7
4,725,246 - Psyr_3977 0.26 +0.0
4,725,342 - Psyr_3977 0.28 -0.2
4,725,366 - Psyr_3977 0.28 +0.9
4,725,622 + Psyr_3977 0.34 -0.6
4,725,622 + Psyr_3977 0.34 -0.1
4,725,623 - Psyr_3977 0.34 +1.6
4,725,783 + Psyr_3977 0.38 +0.7
4,725,783 + Psyr_3977 0.38 +1.3
4,725,783 + Psyr_3977 0.38 +0.7
4,725,784 - Psyr_3977 0.38 +0.0
4,725,784 - Psyr_3977 0.38 +2.5
4,725,791 + Psyr_3977 0.38 -0.2
4,725,791 + Psyr_3977 0.38 -0.4
4,725,792 - Psyr_3977 0.38 -0.2
4,725,792 - Psyr_3977 0.38 +0.3
4,725,827 + Psyr_3977 0.39 +0.5
4,725,844 + Psyr_3977 0.39 -1.5
4,725,845 - Psyr_3977 0.39 +1.5
4,725,845 - Psyr_3977 0.39 -0.5
4,725,845 - Psyr_3977 0.39 -0.2
4,726,002 - Psyr_3977 0.43 -0.1
4,726,025 + Psyr_3977 0.43 -0.1
4,726,040 + Psyr_3977 0.44 +1.3
4,726,041 - Psyr_3977 0.44 +0.5
4,726,188 - Psyr_3977 0.47 +0.5
4,726,406 - Psyr_3977 0.52 -0.6
4,726,406 - Psyr_3977 0.52 -0.9
4,726,487 - Psyr_3977 0.54 -2.8
4,726,514 - Psyr_3977 0.54 -0.2
4,726,612 + Psyr_3977 0.56 -1.7
4,726,639 + Psyr_3977 0.57 -1.7
4,726,640 - Psyr_3977 0.57 -0.7
4,726,745 + Psyr_3977 0.59 +4.1
4,726,745 + Psyr_3977 0.59 +1.1
4,726,745 + Psyr_3977 0.59 +0.7
4,726,745 + Psyr_3977 0.59 -1.1
4,726,745 + Psyr_3977 0.59 +0.5
4,726,745 + Psyr_3977 0.59 -0.4
4,726,747 + Psyr_3977 0.59 +1.7
4,726,747 + Psyr_3977 0.59 +0.5
4,726,961 + Psyr_3977 0.64 -0.6
4,726,961 + Psyr_3977 0.64 -0.5
4,726,961 + Psyr_3977 0.64 +0.8
4,726,961 + Psyr_3977 0.64 -1.5
4,726,961 + Psyr_3977 0.64 +1.5
4,726,961 + Psyr_3977 0.64 +0.5
4,726,961 + Psyr_3977 0.64 -1.4
4,726,962 - Psyr_3977 0.64 +0.8
4,726,962 - Psyr_3977 0.64 +0.3
4,726,962 - Psyr_3977 0.64 +0.9
4,726,962 - Psyr_3977 0.64 -0.5
4,726,963 + Psyr_3977 0.64 +1.4
4,726,963 + Psyr_3977 0.64 -1.4
4,726,964 - Psyr_3977 0.64 -0.5
4,726,964 - Psyr_3977 0.64 -0.8
4,726,990 + Psyr_3977 0.65 -0.3
4,726,991 - Psyr_3977 0.65 +0.4
4,726,991 - Psyr_3977 0.65 -0.2
4,727,070 - Psyr_3977 0.67 +0.7
4,727,070 - Psyr_3977 0.67 +0.2
4,727,070 - Psyr_3977 0.67 -2.5
4,727,197 + Psyr_3977 0.69 +1.0
4,727,279 - Psyr_3977 0.71 +0.9
4,727,675 + Psyr_3977 0.80 +1.1
4,727,676 - Psyr_3977 0.80 +0.0
4,727,773 + Psyr_3977 0.82 +1.5
4,727,773 + Psyr_3977 0.82 -0.1
4,727,773 + Psyr_3977 0.82 +0.9
4,727,774 - Psyr_3977 0.82 +1.5
4,727,792 + Psyr_3977 0.83 +0.1
4,727,792 + Psyr_3977 0.83 +0.8
4,727,793 - Psyr_3977 0.83 +1.2
4,727,819 + Psyr_3977 0.83 -0.5
4,727,879 + Psyr_3977 0.85 +0.4
4,727,879 + Psyr_3977 0.85 -2.4
4,727,879 + Psyr_3977 0.85 +0.1
4,727,879 + Psyr_3977 0.85 +1.8
4,727,880 - Psyr_3977 0.85 +2.3
4,727,880 - Psyr_3977 0.85 +3.3
4,727,880 - Psyr_3977 0.85 +1.1
4,727,880 - Psyr_3977 0.85 +0.4
4,727,933 + Psyr_3977 0.86 -1.5
4,727,933 + Psyr_3977 0.86 +1.2
4,727,933 + Psyr_3977 0.86 +0.5
4,727,933 + Psyr_3977 0.86 +1.5
4,727,934 - Psyr_3977 0.86 -0.8
4,727,934 - Psyr_3977 0.86 +1.8
4,727,934 - Psyr_3977 0.86 -0.1
4,727,934 - Psyr_3977 0.86 +1.5
4,727,945 + Psyr_3977 0.86 -0.3
4,727,945 + Psyr_3977 0.86 +0.5
4,727,945 + Psyr_3977 0.86 +0.1
4,728,173 + +0.5
4,728,650 - -0.3
4,728,843 + Psyr_3978 0.14 +0.2
4,728,844 - Psyr_3978 0.14 +0.7
4,728,886 + Psyr_3978 0.16 +0.5
4,728,892 + Psyr_3978 0.16 -1.6
4,729,010 - Psyr_3978 0.23 +0.5
4,729,205 + Psyr_3978 0.34 -1.5
4,729,274 + Psyr_3978 0.37 +0.9
4,729,313 - Psyr_3978 0.40 +0.9
4,729,313 - Psyr_3978 0.40 +0.4
4,729,525 + Psyr_3978 0.51 +0.3
4,729,525 + Psyr_3978 0.51 +1.8
4,729,526 - Psyr_3978 0.51 +0.2
4,729,526 - Psyr_3978 0.51 -0.2
4,729,526 - Psyr_3978 0.51 -0.2
4,729,553 - Psyr_3978 0.53 +1.1

Or see this region's nucleotide sequence