Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3972

Experiment: KB with Avocatin A 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3971 and Psyr_3972 are separated by 561 nucleotidesPsyr_3972 and Psyr_3973 are separated by 27 nucleotidesPsyr_3973 and Psyr_3974 overlap by 4 nucleotides Psyr_3971: Psyr_3971 - lipoprotein, putative, at 4,718,911 to 4,719,381 _3971 Psyr_3972: Psyr_3972 - ABC transporter, periplasmic substrate-binding protein, at 4,719,943 to 4,721,010 _3972 Psyr_3973: Psyr_3973 - Binding-protein-dependent transport systems inner membrane component, at 4,721,038 to 4,721,853 _3973 Psyr_3974: Psyr_3974 - ABC transporter, at 4,721,850 to 4,722,632 _3974 Position (kb) 4719 4720 4721 4722Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4719.153 kb on - strand, within Psyr_3971at 4719.153 kb on - strand, within Psyr_3971at 4719.153 kb on - strand, within Psyr_3971at 4719.170 kb on + strand, within Psyr_3971at 4719.170 kb on + strand, within Psyr_3971at 4719.171 kb on - strand, within Psyr_3971at 4719.188 kb on + strand, within Psyr_3971at 4719.188 kb on + strand, within Psyr_3971at 4719.188 kb on + strand, within Psyr_3971at 4719.189 kb on - strand, within Psyr_3971at 4719.189 kb on - strand, within Psyr_3971at 4719.191 kb on + strand, within Psyr_3971at 4719.191 kb on + strand, within Psyr_3971at 4719.191 kb on + strand, within Psyr_3971at 4719.192 kb on - strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.230 kb on + strand, within Psyr_3971at 4719.230 kb on + strand, within Psyr_3971at 4719.231 kb on - strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.237 kb on + strand, within Psyr_3971at 4719.293 kb on + strand, within Psyr_3971at 4719.293 kb on + strand, within Psyr_3971at 4719.294 kb on - strand, within Psyr_3971at 4719.294 kb on - strand, within Psyr_3971at 4719.294 kb on - strand, within Psyr_3971at 4719.308 kb on + strand, within Psyr_3971at 4719.308 kb on + strand, within Psyr_3971at 4719.360 kb on + strandat 4719.361 kb on - strandat 4719.377 kb on + strandat 4719.377 kb on + strandat 4719.378 kb on - strandat 4719.378 kb on - strandat 4719.480 kb on + strandat 4719.480 kb on + strandat 4719.510 kb on + strandat 4719.565 kb on - strandat 4719.578 kb on - strandat 4719.589 kb on - strandat 4719.852 kb on + strandat 4720.051 kb on + strand, within Psyr_3972at 4720.051 kb on + strand, within Psyr_3972at 4720.051 kb on + strand, within Psyr_3972at 4720.051 kb on + strand, within Psyr_3972at 4720.051 kb on + strand, within Psyr_3972at 4720.052 kb on - strand, within Psyr_3972at 4720.052 kb on - strand, within Psyr_3972at 4720.052 kb on - strand, within Psyr_3972at 4720.052 kb on - strand, within Psyr_3972at 4720.075 kb on + strand, within Psyr_3972at 4720.118 kb on - strand, within Psyr_3972at 4720.153 kb on + strand, within Psyr_3972at 4720.153 kb on + strand, within Psyr_3972at 4720.153 kb on + strand, within Psyr_3972at 4720.154 kb on - strand, within Psyr_3972at 4720.154 kb on - strand, within Psyr_3972at 4720.378 kb on + strand, within Psyr_3972at 4720.378 kb on + strand, within Psyr_3972at 4720.378 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.484 kb on + strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.485 kb on - strand, within Psyr_3972at 4720.974 kb on + strandat 4720.974 kb on + strandat 4720.974 kb on + strandat 4720.975 kb on - strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.978 kb on + strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4720.979 kb on - strandat 4721.008 kb on + strandat 4721.008 kb on + strandat 4721.009 kb on - strandat 4721.009 kb on - strandat 4721.022 kb on + strandat 4721.023 kb on - strandat 4721.081 kb on + strandat 4721.120 kb on - strand, within Psyr_3973at 4721.120 kb on - strand, within Psyr_3973at 4721.243 kb on - strand, within Psyr_3973at 4721.729 kb on - strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.755 kb on + strand, within Psyr_3973at 4721.756 kb on - strand, within Psyr_3973at 4721.756 kb on - strand, within Psyr_3973at 4721.756 kb on - strand, within Psyr_3973at 4721.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM
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4,719,153 - Psyr_3971 0.51 -1.7
4,719,153 - Psyr_3971 0.51 +1.3
4,719,153 - Psyr_3971 0.51 +1.1
4,719,170 + Psyr_3971 0.55 -0.3
4,719,170 + Psyr_3971 0.55 +1.0
4,719,171 - Psyr_3971 0.55 +1.1
4,719,188 + Psyr_3971 0.59 +0.8
4,719,188 + Psyr_3971 0.59 +0.3
4,719,188 + Psyr_3971 0.59 +0.5
4,719,189 - Psyr_3971 0.59 -0.1
4,719,189 - Psyr_3971 0.59 +0.4
4,719,191 + Psyr_3971 0.59 -0.1
4,719,191 + Psyr_3971 0.59 +0.0
4,719,191 + Psyr_3971 0.59 +0.1
4,719,192 - Psyr_3971 0.60 +1.2
4,719,212 + Psyr_3971 0.64 +1.5
4,719,212 + Psyr_3971 0.64 +0.3
4,719,212 + Psyr_3971 0.64 -1.9
4,719,212 + Psyr_3971 0.64 +1.5
4,719,212 + Psyr_3971 0.64 +2.4
4,719,212 + Psyr_3971 0.64 -0.5
4,719,212 + Psyr_3971 0.64 +0.5
4,719,212 + Psyr_3971 0.64 -0.3
4,719,212 + Psyr_3971 0.64 +1.1
4,719,212 + Psyr_3971 0.64 -0.7
4,719,212 + Psyr_3971 0.64 +1.0
4,719,212 + Psyr_3971 0.64 +0.3
4,719,212 + Psyr_3971 0.64 +0.9
4,719,212 + Psyr_3971 0.64 -0.3
4,719,213 - Psyr_3971 0.64 +0.7
4,719,213 - Psyr_3971 0.64 +0.2
4,719,213 - Psyr_3971 0.64 -1.7
4,719,213 - Psyr_3971 0.64 -1.0
4,719,213 - Psyr_3971 0.64 +0.5
4,719,213 - Psyr_3971 0.64 -0.1
4,719,213 - Psyr_3971 0.64 +1.6
4,719,213 - Psyr_3971 0.64 +0.2
4,719,213 - Psyr_3971 0.64 -0.1
4,719,213 - Psyr_3971 0.64 -0.4
4,719,213 - Psyr_3971 0.64 -0.8
4,719,230 + Psyr_3971 0.68 -0.4
4,719,230 + Psyr_3971 0.68 +0.3
4,719,231 - Psyr_3971 0.68 -1.1
4,719,233 + Psyr_3971 0.68 +0.2
4,719,233 + Psyr_3971 0.68 +0.8
4,719,233 + Psyr_3971 0.68 +2.5
4,719,233 + Psyr_3971 0.68 -0.5
4,719,233 + Psyr_3971 0.68 -0.7
4,719,233 + Psyr_3971 0.68 +0.5
4,719,234 - Psyr_3971 0.69 +1.5
4,719,234 - Psyr_3971 0.69 -0.1
4,719,234 - Psyr_3971 0.69 +0.4
4,719,234 - Psyr_3971 0.69 -2.3
4,719,234 - Psyr_3971 0.69 +0.7
4,719,234 - Psyr_3971 0.69 -1.4
4,719,234 - Psyr_3971 0.69 -0.8
4,719,234 - Psyr_3971 0.69 +1.9
4,719,234 - Psyr_3971 0.69 +3.8
4,719,234 - Psyr_3971 0.69 -0.4
4,719,237 + Psyr_3971 0.69 -0.8
4,719,293 + Psyr_3971 0.81 -0.9
4,719,293 + Psyr_3971 0.81 -0.1
4,719,294 - Psyr_3971 0.81 +0.2
4,719,294 - Psyr_3971 0.81 +0.9
4,719,294 - Psyr_3971 0.81 -0.6
4,719,308 + Psyr_3971 0.84 -0.2
4,719,308 + Psyr_3971 0.84 -1.0
4,719,360 + -0.0
4,719,361 - -0.3
4,719,377 + -0.6
4,719,377 + +0.1
4,719,378 - +0.1
4,719,378 - +2.5
4,719,480 + +0.9
4,719,480 + -1.7
4,719,510 + -0.6
4,719,565 - +0.2
4,719,578 - -0.1
4,719,589 - +1.2
4,719,852 + +0.5
4,720,051 + Psyr_3972 0.10 -0.7
4,720,051 + Psyr_3972 0.10 -1.7
4,720,051 + Psyr_3972 0.10 -0.1
4,720,051 + Psyr_3972 0.10 -1.8
4,720,051 + Psyr_3972 0.10 +0.3
4,720,052 - Psyr_3972 0.10 -0.7
4,720,052 - Psyr_3972 0.10 +0.2
4,720,052 - Psyr_3972 0.10 -1.4
4,720,052 - Psyr_3972 0.10 +0.0
4,720,075 + Psyr_3972 0.12 +0.9
4,720,118 - Psyr_3972 0.16 -1.8
4,720,153 + Psyr_3972 0.20 +1.1
4,720,153 + Psyr_3972 0.20 -0.7
4,720,153 + Psyr_3972 0.20 +2.1
4,720,154 - Psyr_3972 0.20 -2.2
4,720,154 - Psyr_3972 0.20 -0.2
4,720,378 + Psyr_3972 0.41 -0.6
4,720,378 + Psyr_3972 0.41 -0.9
4,720,378 + Psyr_3972 0.41 -1.4
4,720,484 + Psyr_3972 0.51 +1.1
4,720,484 + Psyr_3972 0.51 +0.4
4,720,484 + Psyr_3972 0.51 +0.7
4,720,484 + Psyr_3972 0.51 -1.3
4,720,484 + Psyr_3972 0.51 +0.0
4,720,485 - Psyr_3972 0.51 -1.7
4,720,485 - Psyr_3972 0.51 +0.7
4,720,485 - Psyr_3972 0.51 -0.7
4,720,485 - Psyr_3972 0.51 +0.5
4,720,485 - Psyr_3972 0.51 -0.7
4,720,485 - Psyr_3972 0.51 -1.0
4,720,485 - Psyr_3972 0.51 -0.5
4,720,485 - Psyr_3972 0.51 +0.1
4,720,974 + -0.5
4,720,974 + +0.5
4,720,974 + -0.2
4,720,975 - +0.4
4,720,978 + -0.7
4,720,978 + +0.1
4,720,978 + +0.1
4,720,978 + -0.7
4,720,978 + -0.6
4,720,978 + +1.1
4,720,978 + +0.8
4,720,978 + -0.2
4,720,978 + -1.3
4,720,978 + +0.6
4,720,979 - +0.2
4,720,979 - -2.2
4,720,979 - -0.4
4,720,979 - +1.0
4,720,979 - -1.1
4,720,979 - +1.0
4,720,979 - -0.6
4,720,979 - +0.5
4,720,979 - -0.5
4,721,008 + +0.8
4,721,008 + -0.2
4,721,009 - +0.1
4,721,009 - +0.5
4,721,022 + -0.3
4,721,023 - -1.9
4,721,081 + -2.3
4,721,120 - Psyr_3973 0.10 +0.2
4,721,120 - Psyr_3973 0.10 -0.2
4,721,243 - Psyr_3973 0.25 +0.6
4,721,729 - Psyr_3973 0.85 -0.3
4,721,755 + Psyr_3973 0.88 -1.2
4,721,755 + Psyr_3973 0.88 +0.1
4,721,755 + Psyr_3973 0.88 +0.5
4,721,755 + Psyr_3973 0.88 +0.7
4,721,755 + Psyr_3973 0.88 +0.2
4,721,756 - Psyr_3973 0.88 -1.5
4,721,756 - Psyr_3973 0.88 +2.3
4,721,756 - Psyr_3973 0.88 -0.9
4,721,887 - +0.6

Or see this region's nucleotide sequence