Experiment: KB with Avocatin A 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3892 and Psyr_3893 are separated by 120 nucleotides Psyr_3893 and Psyr_3894 are separated by 149 nucleotides
Psyr_3892: Psyr_3892 - argininosuccinate synthase, at 4,633,473 to 4,634,690
_3892
Psyr_3893: Psyr_3893 - OmpA/MotB, at 4,634,811 to 4,635,713
_3893
Psyr_3894: Psyr_3894 - dihydroorotase, at 4,635,863 to 4,636,906
_3894
Position (kb) 4634
4635
4636 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4634.804 kb on - strand at 4635.002 kb on - strand, within Psyr_3893 at 4635.002 kb on - strand, within Psyr_3893 at 4635.002 kb on - strand, within Psyr_3893 at 4635.288 kb on + strand, within Psyr_3893 at 4635.288 kb on + strand, within Psyr_3893 at 4635.288 kb on + strand, within Psyr_3893 at 4635.288 kb on + strand, within Psyr_3893 at 4635.289 kb on - strand, within Psyr_3893 at 4635.289 kb on - strand, within Psyr_3893 at 4635.289 kb on - strand, within Psyr_3893 at 4635.289 kb on - strand, within Psyr_3893 at 4635.289 kb on - strand, within Psyr_3893 at 4635.316 kb on + strand, within Psyr_3893 at 4635.316 kb on + strand, within Psyr_3893 at 4635.316 kb on + strand, within Psyr_3893 at 4635.317 kb on - strand, within Psyr_3893 at 4635.386 kb on + strand, within Psyr_3893 at 4635.386 kb on + strand, within Psyr_3893 at 4635.387 kb on - strand, within Psyr_3893 at 4635.387 kb on - strand, within Psyr_3893 at 4635.433 kb on - strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.505 kb on + strand, within Psyr_3893 at 4635.506 kb on - strand, within Psyr_3893 at 4635.506 kb on - strand, within Psyr_3893 at 4635.506 kb on - strand, within Psyr_3893 at 4635.506 kb on - strand, within Psyr_3893 at 4635.506 kb on - strand, within Psyr_3893 at 4635.506 kb on - strand, within Psyr_3893 at 4635.506 kb on - strand, within Psyr_3893 at 4635.656 kb on + strand at 4635.696 kb on + strand at 4635.697 kb on - strand at 4635.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Avocatin A 10 mM remove 4,634,804 - -0.1 4,635,002 - Psyr_3893 0.21 +1.2 4,635,002 - Psyr_3893 0.21 +2.2 4,635,002 - Psyr_3893 0.21 -0.2 4,635,288 + Psyr_3893 0.53 +1.9 4,635,288 + Psyr_3893 0.53 +1.5 4,635,288 + Psyr_3893 0.53 +0.7 4,635,288 + Psyr_3893 0.53 +0.5 4,635,289 - Psyr_3893 0.53 +1.4 4,635,289 - Psyr_3893 0.53 +0.7 4,635,289 - Psyr_3893 0.53 +0.9 4,635,289 - Psyr_3893 0.53 +0.3 4,635,289 - Psyr_3893 0.53 +1.9 4,635,316 + Psyr_3893 0.56 +4.5 4,635,316 + Psyr_3893 0.56 -0.0 4,635,316 + Psyr_3893 0.56 -0.1 4,635,317 - Psyr_3893 0.56 +1.3 4,635,386 + Psyr_3893 0.64 -1.9 4,635,386 + Psyr_3893 0.64 +1.5 4,635,387 - Psyr_3893 0.64 -1.8 4,635,387 - Psyr_3893 0.64 +0.4 4,635,433 - Psyr_3893 0.69 -1.2 4,635,505 + Psyr_3893 0.77 +0.3 4,635,505 + Psyr_3893 0.77 -0.5 4,635,505 + Psyr_3893 0.77 +1.8 4,635,505 + Psyr_3893 0.77 +0.0 4,635,505 + Psyr_3893 0.77 +0.5 4,635,505 + Psyr_3893 0.77 +1.4 4,635,505 + Psyr_3893 0.77 -1.6 4,635,505 + Psyr_3893 0.77 -0.8 4,635,505 + Psyr_3893 0.77 -0.3 4,635,506 - Psyr_3893 0.77 -1.5 4,635,506 - Psyr_3893 0.77 -0.8 4,635,506 - Psyr_3893 0.77 +0.1 4,635,506 - Psyr_3893 0.77 -1.5 4,635,506 - Psyr_3893 0.77 +0.8 4,635,506 - Psyr_3893 0.77 -0.7 4,635,506 - Psyr_3893 0.77 -2.6 4,635,656 + -3.2 4,635,696 + -1.4 4,635,697 - -0.8 4,635,700 + +0.4
Or see this region's nucleotide sequence